Experiment: 2-pentyl-furan 1.335528 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS21040 and AZOBR_RS21045 are separated by 26 nucleotides AZOBR_RS21045 and AZOBR_RS21050 are separated by 3 nucleotides AZOBR_RS21050 and AZOBR_RS21055 are separated by 233 nucleotides AZOBR_RS21055 and AZOBR_RS21060 are separated by 46 nucleotides
AZOBR_RS21040: AZOBR_RS21040 - hypothetical protein, at 1,480,478 to 1,481,515
_RS21040
AZOBR_RS21045: AZOBR_RS21045 - ABC transporter permease, at 1,481,542 to 1,482,315
_RS21045
AZOBR_RS21050: AZOBR_RS21050 - nitrate ABC transporter ATP-binding protein, at 1,482,319 to 1,483,161
_RS21050
AZOBR_RS21055: AZOBR_RS21055 - GntR family transcriptional regulator, at 1,483,395 to 1,484,099
_RS21055
AZOBR_RS21060: AZOBR_RS21060 - membrane protein, at 1,484,146 to 1,484,544
_RS21060
Position (kb) 1482
1483
1484 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1481.358 kb on + strand, within AZOBR_RS21040 at 1481.615 kb on + strand at 1481.615 kb on + strand at 1481.616 kb on - strand at 1481.616 kb on - strand at 1481.616 kb on - strand at 1481.616 kb on - strand at 1482.038 kb on + strand, within AZOBR_RS21045 at 1482.039 kb on - strand at 1482.039 kb on - strand, within AZOBR_RS21045 at 1482.039 kb on - strand, within AZOBR_RS21045 at 1482.039 kb on - strand, within AZOBR_RS21045 at 1482.039 kb on - strand, within AZOBR_RS21045 at 1482.050 kb on + strand, within AZOBR_RS21045 at 1482.100 kb on - strand, within AZOBR_RS21045 at 1482.308 kb on + strand at 1482.309 kb on - strand at 1482.309 kb on - strand at 1484.070 kb on - strand at 1484.089 kb on - strand at 1484.098 kb on - strand at 1484.098 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 2-pentyl-furan 1.335528 mM remove 1,481,358 + AZOBR_RS21040 0.85 +0.0 1,481,615 + -1.0 1,481,615 + +0.0 1,481,616 - -0.7 1,481,616 - -0.1 1,481,616 - -0.5 1,481,616 - +1.3 1,482,038 + AZOBR_RS21045 0.64 +0.1 1,482,039 - +2.0 1,482,039 - AZOBR_RS21045 0.64 -1.2 1,482,039 - AZOBR_RS21045 0.64 +1.4 1,482,039 - AZOBR_RS21045 0.64 -1.8 1,482,039 - AZOBR_RS21045 0.64 -1.6 1,482,050 + AZOBR_RS21045 0.66 -0.3 1,482,100 - AZOBR_RS21045 0.72 +0.8 1,482,308 + +0.6 1,482,309 - +1.3 1,482,309 - -1.0 1,484,070 - +2.0 1,484,089 - +1.3 1,484,098 - -0.2 1,484,098 - +0.8
Or see this region's nucleotide sequence