Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS19580

Experiment: 2-pentyl-furan 1.335528 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS19575 and AZOBR_RS19580 are separated by 379 nucleotidesAZOBR_RS19580 and AZOBR_RS19585 are separated by 172 nucleotides AZOBR_RS19575: AZOBR_RS19575 - chromosome partitioning protein, at 1,162,885 to 1,163,535 _RS19575 AZOBR_RS19580: AZOBR_RS19580 - AsnC family transcriptional regulator, at 1,163,915 to 1,164,343 _RS19580 AZOBR_RS19585: AZOBR_RS19585 - arginase, at 1,164,516 to 1,165,463 _RS19585 Position (kb) 1163 1164 1165Strain fitness (log2 ratio) -3 -2 -1 0 1at 1163.147 kb on - strand, within AZOBR_RS19575at 1163.513 kb on - strandat 1163.539 kb on + strandat 1163.707 kb on + strandat 1163.708 kb on - strandat 1163.911 kb on + strandat 1163.912 kb on - strandat 1163.916 kb on + strandat 1163.916 kb on + strandat 1163.917 kb on - strandat 1163.917 kb on - strandat 1163.917 kb on - strandat 1164.067 kb on - strand, within AZOBR_RS19580at 1164.067 kb on - strand, within AZOBR_RS19580at 1164.355 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-pentyl-furan 1.335528 mM
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1,163,147 - AZOBR_RS19575 0.40 -0.7
1,163,513 - -0.7
1,163,539 + +0.3
1,163,707 + -3.0
1,163,708 - -0.3
1,163,911 + -0.1
1,163,912 - +1.1
1,163,916 + +0.2
1,163,916 + -0.2
1,163,917 - -0.5
1,163,917 - +0.2
1,163,917 - -0.4
1,164,067 - AZOBR_RS19580 0.35 +0.4
1,164,067 - AZOBR_RS19580 0.35 -0.6
1,164,355 - -0.3

Or see this region's nucleotide sequence