Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS19080

Experiment: 2-pentyl-furan 1.335528 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS19070 and AZOBR_RS19075 are separated by 250 nucleotidesAZOBR_RS19075 and AZOBR_RS19080 overlap by 1 nucleotidesAZOBR_RS19080 and AZOBR_RS19085 are separated by 98 nucleotides AZOBR_RS19070: AZOBR_RS19070 - hydrogenase, at 1,047,352 to 1,049,583 _RS19070 AZOBR_RS19075: AZOBR_RS19075 - Fe(II)-dependent oxygenase, at 1,049,834 to 1,050,520 _RS19075 AZOBR_RS19080: AZOBR_RS19080 - hypothetical protein, at 1,050,520 to 1,051,191 _RS19080 AZOBR_RS19085: AZOBR_RS19085 - glycolate oxidase, at 1,051,290 to 1,052,378 _RS19085 Position (kb) 1050 1051 1052Strain fitness (log2 ratio) -2 -1 0 1 2at 1049.647 kb on + strandat 1049.647 kb on + strandat 1049.647 kb on + strandat 1049.647 kb on + strandat 1049.647 kb on + strandat 1049.647 kb on + strandat 1049.647 kb on + strandat 1049.648 kb on - strandat 1049.648 kb on - strandat 1049.649 kb on + strandat 1049.649 kb on + strandat 1049.666 kb on - strandat 1050.110 kb on + strand, within AZOBR_RS19075at 1050.248 kb on + strand, within AZOBR_RS19075at 1050.248 kb on + strand, within AZOBR_RS19075at 1050.249 kb on - strand, within AZOBR_RS19075at 1050.249 kb on - strand, within AZOBR_RS19075at 1050.404 kb on + strand, within AZOBR_RS19075at 1050.405 kb on - strand, within AZOBR_RS19075at 1050.748 kb on + strand, within AZOBR_RS19080at 1050.748 kb on + strand, within AZOBR_RS19080at 1050.859 kb on + strandat 1051.241 kb on + strandat 1051.242 kb on - strandat 1051.320 kb on + strandat 1051.371 kb on + strandat 1051.371 kb on + strandat 1051.371 kb on + strandat 1051.686 kb on + strand, within AZOBR_RS19085at 1051.686 kb on + strand, within AZOBR_RS19085at 1051.686 kb on + strand, within AZOBR_RS19085at 1051.686 kb on + strand, within AZOBR_RS19085at 1051.709 kb on + strand, within AZOBR_RS19085at 1051.709 kb on + strand, within AZOBR_RS19085at 1051.710 kb on - strand, within AZOBR_RS19085at 1051.710 kb on - strand, within AZOBR_RS19085

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-pentyl-furan 1.335528 mM
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1,049,647 + -1.1
1,049,647 + -0.9
1,049,647 + -1.0
1,049,647 + -1.2
1,049,647 + +1.2
1,049,647 + -1.9
1,049,647 + -0.7
1,049,648 - +0.5
1,049,648 - +0.5
1,049,649 + -0.3
1,049,649 + -0.1
1,049,666 - +0.0
1,050,110 + AZOBR_RS19075 0.40 +0.5
1,050,248 + AZOBR_RS19075 0.60 -2.2
1,050,248 + AZOBR_RS19075 0.60 +2.6
1,050,249 - AZOBR_RS19075 0.60 -1.0
1,050,249 - AZOBR_RS19075 0.60 +0.1
1,050,404 + AZOBR_RS19075 0.83 +0.6
1,050,405 - AZOBR_RS19075 0.83 -0.3
1,050,748 + AZOBR_RS19080 0.34 +0.5
1,050,748 + AZOBR_RS19080 0.34 +0.4
1,050,859 + +0.7
1,051,241 + -0.1
1,051,242 - -0.3
1,051,320 + -0.2
1,051,371 + -2.1
1,051,371 + -0.2
1,051,371 + -0.2
1,051,686 + AZOBR_RS19085 0.36 +0.3
1,051,686 + AZOBR_RS19085 0.36 +1.0
1,051,686 + AZOBR_RS19085 0.36 -0.0
1,051,686 + AZOBR_RS19085 0.36 +0.8
1,051,709 + AZOBR_RS19085 0.38 +0.6
1,051,709 + AZOBR_RS19085 0.38 -0.3
1,051,710 - AZOBR_RS19085 0.39 -0.5
1,051,710 - AZOBR_RS19085 0.39 +0.3

Or see this region's nucleotide sequence