Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS19035

Experiment: 2-pentyl-furan 1.335528 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS19025 and AZOBR_RS19030 overlap by 1 nucleotidesAZOBR_RS19030 and AZOBR_RS19035 are separated by 63 nucleotidesAZOBR_RS19035 and AZOBR_RS19040 are separated by 79 nucleotidesAZOBR_RS19040 and AZOBR_RS19045 are separated by 221 nucleotides AZOBR_RS19025: AZOBR_RS19025 - acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17] (from data), at 1,037,920 to 1,039,089 _RS19025 AZOBR_RS19030: AZOBR_RS19030 - ornithine carbamoyltransferase, at 1,039,089 to 1,040,003 _RS19030 AZOBR_RS19035: AZOBR_RS19035 - molecular chaperone Hsp33, at 1,040,067 to 1,041,014 _RS19035 AZOBR_RS19040: AZOBR_RS19040 - hypothetical protein, at 1,041,094 to 1,041,681 _RS19040 AZOBR_RS19045: AZOBR_RS19045 - S-adenosyl-L-homocysteine hydrolase, at 1,041,903 to 1,043,222 _RS19045 Position (kb) 1040 1041 1042Strain fitness (log2 ratio) -3 -2 -1 0 1at 1039.997 kb on + strandat 1039.998 kb on - strandat 1039.998 kb on - strandat 1040.001 kb on + strandat 1040.001 kb on + strandat 1040.269 kb on - strand, within AZOBR_RS19035at 1040.538 kb on + strand, within AZOBR_RS19035at 1040.997 kb on + strandat 1041.012 kb on + strandat 1041.058 kb on - strandat 1041.427 kb on + strand, within AZOBR_RS19040at 1041.427 kb on + strand, within AZOBR_RS19040at 1041.427 kb on + strand, within AZOBR_RS19040at 1041.427 kb on + strand, within AZOBR_RS19040at 1041.427 kb on + strand, within AZOBR_RS19040at 1041.427 kb on + strand, within AZOBR_RS19040at 1041.428 kb on - strand, within AZOBR_RS19040at 1041.428 kb on - strand, within AZOBR_RS19040at 1041.716 kb on - strandat 1041.747 kb on + strandat 1041.904 kb on + strandat 1041.905 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-pentyl-furan 1.335528 mM
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1,039,997 + -1.1
1,039,998 - +1.5
1,039,998 - +0.3
1,040,001 + -3.2
1,040,001 + -0.2
1,040,269 - AZOBR_RS19035 0.21 +0.2
1,040,538 + AZOBR_RS19035 0.50 +0.7
1,040,997 + +0.3
1,041,012 + +0.1
1,041,058 - -0.9
1,041,427 + AZOBR_RS19040 0.57 +0.1
1,041,427 + AZOBR_RS19040 0.57 -0.3
1,041,427 + AZOBR_RS19040 0.57 -0.0
1,041,427 + AZOBR_RS19040 0.57 +0.4
1,041,427 + AZOBR_RS19040 0.57 +0.7
1,041,427 + AZOBR_RS19040 0.57 +0.1
1,041,428 - AZOBR_RS19040 0.57 -1.5
1,041,428 - AZOBR_RS19040 0.57 -0.1
1,041,716 - -0.4
1,041,747 + +1.0
1,041,904 + +0.0
1,041,905 - -0.1

Or see this region's nucleotide sequence