Experiment: 2-pentyl-furan 1.335528 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS19025 and AZOBR_RS19030 overlap by 1 nucleotides AZOBR_RS19030 and AZOBR_RS19035 are separated by 63 nucleotides AZOBR_RS19035 and AZOBR_RS19040 are separated by 79 nucleotides AZOBR_RS19040 and AZOBR_RS19045 are separated by 221 nucleotides
AZOBR_RS19025: AZOBR_RS19025 - acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17] (from data) , at 1,037,920 to 1,039,089
_RS19025
AZOBR_RS19030: AZOBR_RS19030 - ornithine carbamoyltransferase, at 1,039,089 to 1,040,003
_RS19030
AZOBR_RS19035: AZOBR_RS19035 - molecular chaperone Hsp33, at 1,040,067 to 1,041,014
_RS19035
AZOBR_RS19040: AZOBR_RS19040 - hypothetical protein, at 1,041,094 to 1,041,681
_RS19040
AZOBR_RS19045: AZOBR_RS19045 - S-adenosyl-L-homocysteine hydrolase, at 1,041,903 to 1,043,222
_RS19045
Position (kb)
1040
1041
1042 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1039.997 kb on + strand at 1039.998 kb on - strand at 1039.998 kb on - strand at 1040.001 kb on + strand at 1040.001 kb on + strand at 1040.269 kb on - strand, within AZOBR_RS19035 at 1040.538 kb on + strand, within AZOBR_RS19035 at 1040.997 kb on + strand at 1041.012 kb on + strand at 1041.058 kb on - strand at 1041.427 kb on + strand, within AZOBR_RS19040 at 1041.427 kb on + strand, within AZOBR_RS19040 at 1041.427 kb on + strand, within AZOBR_RS19040 at 1041.427 kb on + strand, within AZOBR_RS19040 at 1041.427 kb on + strand, within AZOBR_RS19040 at 1041.427 kb on + strand, within AZOBR_RS19040 at 1041.428 kb on - strand, within AZOBR_RS19040 at 1041.428 kb on - strand, within AZOBR_RS19040 at 1041.716 kb on - strand at 1041.747 kb on + strand at 1041.904 kb on + strand at 1041.905 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 2-pentyl-furan 1.335528 mM remove 1,039,997 + -1.1 1,039,998 - +1.5 1,039,998 - +0.3 1,040,001 + -3.2 1,040,001 + -0.2 1,040,269 - AZOBR_RS19035 0.21 +0.2 1,040,538 + AZOBR_RS19035 0.50 +0.7 1,040,997 + +0.3 1,041,012 + +0.1 1,041,058 - -0.9 1,041,427 + AZOBR_RS19040 0.57 +0.1 1,041,427 + AZOBR_RS19040 0.57 -0.3 1,041,427 + AZOBR_RS19040 0.57 -0.0 1,041,427 + AZOBR_RS19040 0.57 +0.4 1,041,427 + AZOBR_RS19040 0.57 +0.7 1,041,427 + AZOBR_RS19040 0.57 +0.1 1,041,428 - AZOBR_RS19040 0.57 -1.5 1,041,428 - AZOBR_RS19040 0.57 -0.1 1,041,716 - -0.4 1,041,747 + +1.0 1,041,904 + +0.0 1,041,905 - -0.1
Or see this region's nucleotide sequence