Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS18590

Experiment: 2-pentyl-furan 1.335528 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS18585 and AZOBR_RS18590 are separated by 432 nucleotides AZOBR_RS18585: AZOBR_RS18585 - peptidase, at 941,028 to 941,819 _RS18585 AZOBR_RS18590: AZOBR_RS18590 - hypothetical protein, at 942,252 to 942,572 _RS18590 Position (kb) 942 943Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 941.354 kb on - strand, within AZOBR_RS18585at 941.702 kb on + strand, within AZOBR_RS18585at 941.702 kb on + strand, within AZOBR_RS18585at 941.702 kb on + strand, within AZOBR_RS18585at 941.702 kb on + strand, within AZOBR_RS18585at 941.703 kb on - strand, within AZOBR_RS18585at 941.703 kb on - strand, within AZOBR_RS18585at 941.703 kb on - strand, within AZOBR_RS18585at 941.703 kb on - strand, within AZOBR_RS18585at 941.831 kb on + strandat 942.286 kb on - strand, within AZOBR_RS18590at 942.286 kb on - strandat 942.286 kb on - strand, within AZOBR_RS18590at 942.286 kb on - strand, within AZOBR_RS18590at 942.286 kb on - strand, within AZOBR_RS18590at 942.327 kb on + strand, within AZOBR_RS18590at 942.327 kb on + strand, within AZOBR_RS18590at 942.327 kb on + strand, within AZOBR_RS18590at 942.327 kb on + strand, within AZOBR_RS18590at 942.328 kb on - strand, within AZOBR_RS18590at 942.328 kb on - strand, within AZOBR_RS18590at 942.465 kb on + strand, within AZOBR_RS18590at 942.465 kb on + strand, within AZOBR_RS18590at 942.465 kb on + strand, within AZOBR_RS18590at 942.466 kb on - strand, within AZOBR_RS18590at 942.466 kb on - strand, within AZOBR_RS18590at 942.466 kb on - strand, within AZOBR_RS18590at 942.471 kb on + strand, within AZOBR_RS18590at 942.471 kb on + strand, within AZOBR_RS18590at 942.471 kb on + strand, within AZOBR_RS18590at 942.471 kb on + strand, within AZOBR_RS18590at 942.472 kb on - strand, within AZOBR_RS18590at 942.472 kb on - strand, within AZOBR_RS18590at 942.712 kb on + strandat 943.060 kb on + strandat 943.061 kb on - strandat 943.061 kb on - strandat 943.061 kb on - strandat 943.096 kb on + strandat 943.097 kb on - strandat 943.097 kb on - strandat 943.097 kb on - strandat 943.097 kb on - strandat 943.097 kb on - strandat 943.097 kb on - strandat 943.195 kb on + strandat 943.195 kb on + strandat 943.196 kb on - strandat 943.207 kb on + strandat 943.207 kb on + strandat 943.208 kb on - strandat 943.208 kb on - strandat 943.264 kb on + strandat 943.264 kb on + strandat 943.264 kb on + strandat 943.264 kb on + strandat 943.264 kb on + strandat 943.265 kb on - strandat 943.372 kb on + strandat 943.372 kb on + strandat 943.373 kb on - strandat 943.373 kb on - strandat 943.373 kb on - strandat 943.399 kb on + strandat 943.460 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-pentyl-furan 1.335528 mM
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941,354 - AZOBR_RS18585 0.41 +0.0
941,702 + AZOBR_RS18585 0.85 -0.8
941,702 + AZOBR_RS18585 0.85 -0.8
941,702 + AZOBR_RS18585 0.85 -0.8
941,702 + AZOBR_RS18585 0.85 -3.0
941,703 - AZOBR_RS18585 0.85 -2.9
941,703 - AZOBR_RS18585 0.85 -2.8
941,703 - AZOBR_RS18585 0.85 -1.5
941,703 - AZOBR_RS18585 0.85 -1.4
941,831 + -0.6
942,286 - AZOBR_RS18590 0.11 -0.2
942,286 - -0.6
942,286 - AZOBR_RS18590 0.11 +0.4
942,286 - AZOBR_RS18590 0.11 -0.8
942,286 - AZOBR_RS18590 0.11 -0.9
942,327 + AZOBR_RS18590 0.23 +0.1
942,327 + AZOBR_RS18590 0.23 -0.9
942,327 + AZOBR_RS18590 0.23 +0.6
942,327 + AZOBR_RS18590 0.23 -2.4
942,328 - AZOBR_RS18590 0.24 -2.2
942,328 - AZOBR_RS18590 0.24 -2.7
942,465 + AZOBR_RS18590 0.66 -0.3
942,465 + AZOBR_RS18590 0.66 -1.6
942,465 + AZOBR_RS18590 0.66 -1.4
942,466 - AZOBR_RS18590 0.67 +0.0
942,466 - AZOBR_RS18590 0.67 -0.6
942,466 - AZOBR_RS18590 0.67 +0.2
942,471 + AZOBR_RS18590 0.68 -0.5
942,471 + AZOBR_RS18590 0.68 +0.2
942,471 + AZOBR_RS18590 0.68 +0.4
942,471 + AZOBR_RS18590 0.68 +0.4
942,472 - AZOBR_RS18590 0.69 +0.8
942,472 - AZOBR_RS18590 0.69 -0.5
942,712 + -0.1
943,060 + -2.8
943,061 - +1.2
943,061 - +2.4
943,061 - -2.2
943,096 + -0.6
943,097 - -1.4
943,097 - -1.7
943,097 - -0.1
943,097 - -0.6
943,097 - +0.8
943,097 - -0.0
943,195 + -1.4
943,195 + +0.4
943,196 - -1.4
943,207 + +1.3
943,207 + -1.6
943,208 - -0.4
943,208 - -0.8
943,264 + -1.9
943,264 + +0.4
943,264 + +1.5
943,264 + -0.3
943,264 + +0.3
943,265 - -0.1
943,372 + +0.2
943,372 + -3.0
943,373 - -2.1
943,373 - -0.8
943,373 - +0.1
943,399 + +1.7
943,460 - +0.3

Or see this region's nucleotide sequence