Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS18500

Experiment: 2-pentyl-furan 1.335528 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS18495 and AZOBR_RS18500 overlap by 1 nucleotidesAZOBR_RS18500 and AZOBR_RS18505 are separated by 410 nucleotides AZOBR_RS18495: AZOBR_RS18495 - metallophosphatase, at 915,457 to 916,713 _RS18495 AZOBR_RS18500: AZOBR_RS18500 - hypothetical protein, at 916,713 to 920,411 _RS18500 AZOBR_RS18505: AZOBR_RS18505 - hypothetical protein, at 920,822 to 921,049 _RS18505 Position (kb) 916 917 918 919 920 921Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 915.883 kb on + strand, within AZOBR_RS18495at 915.971 kb on - strand, within AZOBR_RS18495at 915.971 kb on - strand, within AZOBR_RS18495at 916.042 kb on + strand, within AZOBR_RS18495at 916.042 kb on + strand, within AZOBR_RS18495at 916.042 kb on + strand, within AZOBR_RS18495at 916.141 kb on + strand, within AZOBR_RS18495at 916.141 kb on + strand, within AZOBR_RS18495at 916.141 kb on + strand, within AZOBR_RS18495at 916.142 kb on - strand, within AZOBR_RS18495at 916.142 kb on - strand, within AZOBR_RS18495at 916.142 kb on - strand, within AZOBR_RS18495at 916.202 kb on - strand, within AZOBR_RS18495at 916.243 kb on + strand, within AZOBR_RS18495at 916.290 kb on + strand, within AZOBR_RS18495at 916.290 kb on + strand, within AZOBR_RS18495at 916.290 kb on + strand, within AZOBR_RS18495at 916.291 kb on - strand, within AZOBR_RS18495at 916.291 kb on - strandat 916.291 kb on - strand, within AZOBR_RS18495at 916.432 kb on + strand, within AZOBR_RS18495at 916.432 kb on + strand, within AZOBR_RS18495at 916.433 kb on - strand, within AZOBR_RS18495at 916.433 kb on - strand, within AZOBR_RS18495at 916.433 kb on - strand, within AZOBR_RS18495at 916.433 kb on - strand, within AZOBR_RS18495at 916.433 kb on - strand, within AZOBR_RS18495at 916.436 kb on + strand, within AZOBR_RS18495at 916.436 kb on + strand, within AZOBR_RS18495at 916.437 kb on - strand, within AZOBR_RS18495at 916.437 kb on - strand, within AZOBR_RS18495at 916.437 kb on - strand, within AZOBR_RS18495at 916.437 kb on - strand, within AZOBR_RS18495at 916.437 kb on - strand, within AZOBR_RS18495at 917.304 kb on + strand, within AZOBR_RS18500at 917.304 kb on + strand, within AZOBR_RS18500at 917.304 kb on + strand, within AZOBR_RS18500at 917.305 kb on - strand, within AZOBR_RS18500at 919.435 kb on - strand, within AZOBR_RS18500at 920.219 kb on + strandat 920.478 kb on + strandat 920.478 kb on + strandat 920.479 kb on - strandat 920.575 kb on + strandat 920.575 kb on + strandat 920.613 kb on + strandat 920.613 kb on + strandat 920.613 kb on + strandat 920.614 kb on - strandat 920.614 kb on - strandat 920.614 kb on - strandat 920.614 kb on - strandat 920.614 kb on - strandat 920.614 kb on - strandat 920.614 kb on - strandat 920.614 kb on - strandat 921.036 kb on + strandat 921.036 kb on + strandat 921.036 kb on + strandat 921.036 kb on - strandat 921.037 kb on - strandat 921.037 kb on - strandat 921.037 kb on - strandat 921.069 kb on + strandat 921.070 kb on - strandat 921.070 kb on - strandat 921.159 kb on + strandat 921.159 kb on + strandat 921.159 kb on + strandat 921.160 kb on - strandat 921.160 kb on - strandat 921.160 kb on - strandat 921.160 kb on - strandat 921.160 kb on - strandat 921.160 kb on - strandat 921.160 kb on - strandat 921.196 kb on - strandat 921.196 kb on - strandat 921.196 kb on - strandat 921.196 kb on - strandat 921.273 kb on + strandat 921.273 kb on + strandat 921.273 kb on + strandat 921.273 kb on + strandat 921.274 kb on - strandat 921.274 kb on - strandat 921.276 kb on + strandat 921.277 kb on - strandat 921.277 kb on - strandat 921.277 kb on - strandat 921.277 kb on - strandat 921.327 kb on + strandat 921.327 kb on + strandat 921.328 kb on - strandat 921.328 kb on - strandat 921.328 kb on - strandat 921.328 kb on - strandat 921.328 kb on - strandat 921.328 kb on - strandat 921.330 kb on + strandat 921.330 kb on + strandat 921.331 kb on - strandat 921.331 kb on - strandat 921.390 kb on + strandat 921.391 kb on - strandat 921.391 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-pentyl-furan 1.335528 mM
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915,883 + AZOBR_RS18495 0.34 -1.1
915,971 - AZOBR_RS18495 0.41 -2.0
915,971 - AZOBR_RS18495 0.41 -0.9
916,042 + AZOBR_RS18495 0.47 -1.0
916,042 + AZOBR_RS18495 0.47 -0.0
916,042 + AZOBR_RS18495 0.47 -2.7
916,141 + AZOBR_RS18495 0.54 -0.7
916,141 + AZOBR_RS18495 0.54 +1.4
916,141 + AZOBR_RS18495 0.54 -0.4
916,142 - AZOBR_RS18495 0.54 -0.2
916,142 - AZOBR_RS18495 0.54 -2.8
916,142 - AZOBR_RS18495 0.54 -0.7
916,202 - AZOBR_RS18495 0.59 -1.0
916,243 + AZOBR_RS18495 0.63 -0.3
916,290 + AZOBR_RS18495 0.66 +1.7
916,290 + AZOBR_RS18495 0.66 -0.8
916,290 + AZOBR_RS18495 0.66 -1.1
916,291 - AZOBR_RS18495 0.66 -1.5
916,291 - -0.0
916,291 - AZOBR_RS18495 0.66 -0.4
916,432 + AZOBR_RS18495 0.78 +1.0
916,432 + AZOBR_RS18495 0.78 +0.6
916,433 - AZOBR_RS18495 0.78 -0.1
916,433 - AZOBR_RS18495 0.78 +0.8
916,433 - AZOBR_RS18495 0.78 -0.9
916,433 - AZOBR_RS18495 0.78 +0.2
916,433 - AZOBR_RS18495 0.78 -1.3
916,436 + AZOBR_RS18495 0.78 +0.2
916,436 + AZOBR_RS18495 0.78 -0.1
916,437 - AZOBR_RS18495 0.78 +0.2
916,437 - AZOBR_RS18495 0.78 -3.1
916,437 - AZOBR_RS18495 0.78 -1.0
916,437 - AZOBR_RS18495 0.78 -0.0
916,437 - AZOBR_RS18495 0.78 -0.0
917,304 + AZOBR_RS18500 0.16 -2.5
917,304 + AZOBR_RS18500 0.16 -3.7
917,304 + AZOBR_RS18500 0.16 +0.1
917,305 - AZOBR_RS18500 0.16 -0.1
919,435 - AZOBR_RS18500 0.74 -1.1
920,219 + -1.3
920,478 + +0.9
920,478 + -3.0
920,479 - +0.0
920,575 + -0.4
920,575 + -1.7
920,613 + -0.1
920,613 + +0.4
920,613 + +0.4
920,614 - +0.7
920,614 - -0.2
920,614 - -1.8
920,614 - +0.4
920,614 - +1.3
920,614 - -0.1
920,614 - +0.1
920,614 - -0.6
921,036 + +2.2
921,036 + -0.3
921,036 + +1.1
921,036 - -0.3
921,037 - +1.1
921,037 - +0.8
921,037 - +0.0
921,069 + -0.8
921,070 - +0.2
921,070 - -0.4
921,159 + +2.1
921,159 + -1.0
921,159 + +0.4
921,160 - -0.1
921,160 - +0.2
921,160 - -2.3
921,160 - -1.7
921,160 - +0.7
921,160 - -0.1
921,160 - +0.4
921,196 - -1.0
921,196 - +0.7
921,196 - -0.9
921,196 - -0.9
921,273 + +2.0
921,273 + +1.0
921,273 + -2.4
921,273 + -1.0
921,274 - -0.8
921,274 - -0.4
921,276 + +1.0
921,277 - -0.6
921,277 - -0.1
921,277 - -3.4
921,277 - +1.2
921,327 + -2.3
921,327 + +1.2
921,328 - +1.2
921,328 - -1.2
921,328 - -0.4
921,328 - -0.1
921,328 - -0.9
921,328 - -1.9
921,330 + -0.4
921,330 + -2.6
921,331 - +0.4
921,331 - -0.6
921,390 + -1.9
921,391 - -2.0
921,391 - -1.5

Or see this region's nucleotide sequence