Experiment: 2-pentyl-furan 1.335528 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS14510 and AZOBR_RS14515 are separated by 10 nucleotides AZOBR_RS14515 and AZOBR_RS14520 overlap by 4 nucleotides AZOBR_RS14520 and AZOBR_RS14525 are separated by 1 nucleotides
AZOBR_RS14510: AZOBR_RS14510 - hydrogenase expression protein HypE, at 24,133 to 25,674
_RS14510
AZOBR_RS14515: AZOBR_RS14515 - oxidoreductase, at 25,685 to 27,142
_RS14515
AZOBR_RS14520: AZOBR_RS14520 - hydrogenase-4 component E, at 27,139 to 27,801
_RS14520
AZOBR_RS14525: AZOBR_RS14525 - formate hydrogenlyase, at 27,803 to 28,720
_RS14525
Position (kb) 25
26
27
28 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 25.250 kb on + strand, within AZOBR_RS14510 at 25.251 kb on - strand, within AZOBR_RS14510 at 25.367 kb on + strand, within AZOBR_RS14510 at 25.368 kb on - strand, within AZOBR_RS14510 at 25.671 kb on - strand at 25.671 kb on - strand at 25.776 kb on + strand at 26.119 kb on - strand, within AZOBR_RS14515 at 26.222 kb on - strand, within AZOBR_RS14515 at 26.238 kb on + strand, within AZOBR_RS14515 at 26.625 kb on + strand, within AZOBR_RS14515 at 26.625 kb on + strand, within AZOBR_RS14515 at 26.625 kb on + strand, within AZOBR_RS14515 at 26.625 kb on + strand, within AZOBR_RS14515 at 26.626 kb on - strand, within AZOBR_RS14515 at 26.626 kb on - strand, within AZOBR_RS14515 at 26.626 kb on - strand, within AZOBR_RS14515 at 26.626 kb on - strand, within AZOBR_RS14515 at 26.683 kb on - strand, within AZOBR_RS14515 at 26.683 kb on - strand, within AZOBR_RS14515 at 26.683 kb on - strand, within AZOBR_RS14515 at 26.829 kb on + strand, within AZOBR_RS14515 at 26.829 kb on + strand, within AZOBR_RS14515 at 26.829 kb on + strand, within AZOBR_RS14515 at 26.830 kb on - strand, within AZOBR_RS14515 at 26.830 kb on - strand, within AZOBR_RS14515 at 26.830 kb on - strand, within AZOBR_RS14515 at 26.830 kb on - strand, within AZOBR_RS14515 at 26.830 kb on - strand, within AZOBR_RS14515 at 26.830 kb on - strand, within AZOBR_RS14515 at 26.841 kb on + strand, within AZOBR_RS14515 at 26.841 kb on + strand, within AZOBR_RS14515 at 26.842 kb on - strand, within AZOBR_RS14515 at 26.842 kb on - strand, within AZOBR_RS14515 at 26.895 kb on + strand, within AZOBR_RS14515 at 26.896 kb on - strand, within AZOBR_RS14515 at 26.952 kb on + strand, within AZOBR_RS14515 at 26.952 kb on + strand, within AZOBR_RS14515 at 26.952 kb on + strand, within AZOBR_RS14515 at 26.952 kb on + strand, within AZOBR_RS14515 at 26.952 kb on + strand, within AZOBR_RS14515 at 26.953 kb on - strand, within AZOBR_RS14515 at 27.529 kb on + strand, within AZOBR_RS14520 at 27.529 kb on + strand, within AZOBR_RS14520 at 27.530 kb on - strand, within AZOBR_RS14520 at 27.530 kb on - strand, within AZOBR_RS14520 at 27.530 kb on - strand, within AZOBR_RS14520 at 27.623 kb on + strand, within AZOBR_RS14520 at 27.623 kb on + strand, within AZOBR_RS14520 at 27.624 kb on - strand, within AZOBR_RS14520 at 27.624 kb on - strand, within AZOBR_RS14520 at 27.647 kb on + strand, within AZOBR_RS14520 at 27.647 kb on + strand, within AZOBR_RS14520 at 27.648 kb on - strand, within AZOBR_RS14520 at 27.786 kb on - strand at 27.822 kb on + strand at 27.823 kb on - strand at 28.047 kb on + strand, within AZOBR_RS14525 at 28.047 kb on + strand, within AZOBR_RS14525 at 28.047 kb on + strand, within AZOBR_RS14525 at 28.047 kb on + strand, within AZOBR_RS14525 at 28.048 kb on - strand, within AZOBR_RS14525 at 28.048 kb on - strand, within AZOBR_RS14525
Per-strain Table
Position Strand Gene LocusTag Fraction 2-pentyl-furan 1.335528 mM remove 25,250 + AZOBR_RS14510 0.72 -1.5 25,251 - AZOBR_RS14510 0.73 -0.3 25,367 + AZOBR_RS14510 0.80 +0.7 25,368 - AZOBR_RS14510 0.80 -0.8 25,671 - -0.3 25,671 - +1.5 25,776 + -1.5 26,119 - AZOBR_RS14515 0.30 -0.6 26,222 - AZOBR_RS14515 0.37 +0.1 26,238 + AZOBR_RS14515 0.38 -0.5 26,625 + AZOBR_RS14515 0.64 +0.2 26,625 + AZOBR_RS14515 0.64 -0.4 26,625 + AZOBR_RS14515 0.64 -0.7 26,625 + AZOBR_RS14515 0.64 +0.8 26,626 - AZOBR_RS14515 0.65 -0.5 26,626 - AZOBR_RS14515 0.65 -1.0 26,626 - AZOBR_RS14515 0.65 -3.2 26,626 - AZOBR_RS14515 0.65 -1.0 26,683 - AZOBR_RS14515 0.68 +0.1 26,683 - AZOBR_RS14515 0.68 +1.3 26,683 - AZOBR_RS14515 0.68 +0.9 26,829 + AZOBR_RS14515 0.78 -0.5 26,829 + AZOBR_RS14515 0.78 -0.3 26,829 + AZOBR_RS14515 0.78 +0.1 26,830 - AZOBR_RS14515 0.79 +0.7 26,830 - AZOBR_RS14515 0.79 -1.9 26,830 - AZOBR_RS14515 0.79 -0.3 26,830 - AZOBR_RS14515 0.79 -0.2 26,830 - AZOBR_RS14515 0.79 -0.8 26,830 - AZOBR_RS14515 0.79 +1.0 26,841 + AZOBR_RS14515 0.79 -1.4 26,841 + AZOBR_RS14515 0.79 -2.5 26,842 - AZOBR_RS14515 0.79 +0.1 26,842 - AZOBR_RS14515 0.79 +0.1 26,895 + AZOBR_RS14515 0.83 +0.0 26,896 - AZOBR_RS14515 0.83 +1.5 26,952 + AZOBR_RS14515 0.87 -0.1 26,952 + AZOBR_RS14515 0.87 -0.1 26,952 + AZOBR_RS14515 0.87 -0.5 26,952 + AZOBR_RS14515 0.87 -3.2 26,952 + AZOBR_RS14515 0.87 -0.1 26,953 - AZOBR_RS14515 0.87 +1.7 27,529 + AZOBR_RS14520 0.59 +1.0 27,529 + AZOBR_RS14520 0.59 +0.1 27,530 - AZOBR_RS14520 0.59 -0.3 27,530 - AZOBR_RS14520 0.59 -0.6 27,530 - AZOBR_RS14520 0.59 +0.0 27,623 + AZOBR_RS14520 0.73 -0.7 27,623 + AZOBR_RS14520 0.73 -0.7 27,624 - AZOBR_RS14520 0.73 +1.0 27,624 - AZOBR_RS14520 0.73 -3.0 27,647 + AZOBR_RS14520 0.77 +1.8 27,647 + AZOBR_RS14520 0.77 -0.4 27,648 - AZOBR_RS14520 0.77 +1.2 27,786 - -0.5 27,822 + -1.1 27,823 - +0.3 28,047 + AZOBR_RS14525 0.27 +0.0 28,047 + AZOBR_RS14525 0.27 -0.5 28,047 + AZOBR_RS14525 0.27 +0.0 28,047 + AZOBR_RS14525 0.27 -0.3 28,048 - AZOBR_RS14525 0.27 -0.8 28,048 - AZOBR_RS14525 0.27 -0.1
Or see this region's nucleotide sequence