Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS14115

Experiment: 2-pentyl-furan 1.335528 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS14110 and AZOBR_RS14115 are separated by 165 nucleotidesAZOBR_RS14115 and AZOBR_RS14120 are separated by 903 nucleotides AZOBR_RS14110: AZOBR_RS14110 - pyridoxamine kinase, at 2,968,455 to 2,969,315 _RS14110 AZOBR_RS14115: AZOBR_RS14115 - (3S)-malyl-CoA thiolesterase, at 2,969,481 to 2,970,356 _RS14115 AZOBR_RS14120: AZOBR_RS14120 - hypothetical protein, at 2,971,260 to 2,971,778 _RS14120 Position (kb) 2969 2970 2971Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2968.567 kb on + strand, within AZOBR_RS14110at 2968.567 kb on + strand, within AZOBR_RS14110at 2968.567 kb on + strand, within AZOBR_RS14110at 2968.567 kb on + strand, within AZOBR_RS14110at 2968.568 kb on - strand, within AZOBR_RS14110at 2968.568 kb on - strand, within AZOBR_RS14110at 2968.568 kb on - strand, within AZOBR_RS14110at 2968.568 kb on - strand, within AZOBR_RS14110at 2968.568 kb on - strand, within AZOBR_RS14110at 2968.621 kb on + strand, within AZOBR_RS14110at 2968.622 kb on - strand, within AZOBR_RS14110at 2968.864 kb on + strand, within AZOBR_RS14110at 2968.865 kb on - strand, within AZOBR_RS14110at 2968.993 kb on + strand, within AZOBR_RS14110at 2968.994 kb on - strand, within AZOBR_RS14110at 2969.071 kb on + strand, within AZOBR_RS14110at 2969.071 kb on + strand, within AZOBR_RS14110at 2969.072 kb on - strand, within AZOBR_RS14110at 2969.072 kb on - strand, within AZOBR_RS14110at 2969.406 kb on + strandat 2969.407 kb on - strandat 2969.517 kb on + strandat 2969.517 kb on + strandat 2969.517 kb on + strandat 2969.517 kb on + strandat 2969.518 kb on - strandat 2969.518 kb on - strandat 2969.518 kb on - strandat 2969.664 kb on + strand, within AZOBR_RS14115at 2969.719 kb on - strand, within AZOBR_RS14115at 2970.395 kb on - strandat 2970.686 kb on + strandat 2971.118 kb on + strandat 2971.153 kb on + strandat 2971.171 kb on - strandat 2971.197 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-pentyl-furan 1.335528 mM
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2,968,567 + AZOBR_RS14110 0.13 +0.3
2,968,567 + AZOBR_RS14110 0.13 -0.1
2,968,567 + AZOBR_RS14110 0.13 +0.1
2,968,567 + AZOBR_RS14110 0.13 -0.2
2,968,568 - AZOBR_RS14110 0.13 +1.7
2,968,568 - AZOBR_RS14110 0.13 +0.4
2,968,568 - AZOBR_RS14110 0.13 -2.7
2,968,568 - AZOBR_RS14110 0.13 +0.1
2,968,568 - AZOBR_RS14110 0.13 -0.1
2,968,621 + AZOBR_RS14110 0.19 -1.1
2,968,622 - AZOBR_RS14110 0.19 +0.2
2,968,864 + AZOBR_RS14110 0.48 -1.7
2,968,865 - AZOBR_RS14110 0.48 +0.4
2,968,993 + AZOBR_RS14110 0.62 -1.1
2,968,994 - AZOBR_RS14110 0.63 +0.4
2,969,071 + AZOBR_RS14110 0.72 -0.2
2,969,071 + AZOBR_RS14110 0.72 +0.6
2,969,072 - AZOBR_RS14110 0.72 +0.7
2,969,072 - AZOBR_RS14110 0.72 -0.3
2,969,406 + -0.2
2,969,407 - +0.3
2,969,517 + -2.6
2,969,517 + -3.1
2,969,517 + -1.7
2,969,517 + +0.3
2,969,518 - +1.3
2,969,518 - +0.5
2,969,518 - -0.8
2,969,664 + AZOBR_RS14115 0.21 -0.9
2,969,719 - AZOBR_RS14115 0.27 -0.7
2,970,395 - -1.0
2,970,686 + -0.9
2,971,118 + -0.9
2,971,153 + -0.2
2,971,171 - +1.9
2,971,197 + -0.8

Or see this region's nucleotide sequence