Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS13530

Experiment: 2-pentyl-furan 1.335528 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS13520 and AZOBR_RS13525 overlap by 4 nucleotidesAZOBR_RS13525 and AZOBR_RS13530 are separated by 305 nucleotidesAZOBR_RS13530 and AZOBR_RS13535 are separated by 97 nucleotides AZOBR_RS13520: AZOBR_RS13520 - dihydroorotate dehydrogenase, at 2,870,145 to 2,871,218 _RS13520 AZOBR_RS13525: AZOBR_RS13525 - glutathione S-transferase, at 2,871,215 to 2,871,577 _RS13525 AZOBR_RS13530: AZOBR_RS13530 - hypothetical protein, at 2,871,883 to 2,872,131 _RS13530 AZOBR_RS13535: AZOBR_RS13535 - hydrolase, at 2,872,229 to 2,872,630 _RS13535 Position (kb) 2871 2872 2873Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2871.318 kb on + strand, within AZOBR_RS13525at 2871.508 kb on - strand, within AZOBR_RS13525at 2871.508 kb on - strand, within AZOBR_RS13525at 2871.553 kb on + strandat 2871.553 kb on + strandat 2871.553 kb on + strandat 2871.553 kb on + strandat 2871.553 kb on + strandat 2871.553 kb on + strandat 2871.554 kb on - strandat 2871.554 kb on - strandat 2871.653 kb on + strandat 2871.653 kb on + strandat 2871.653 kb on + strandat 2871.654 kb on - strandat 2871.654 kb on - strandat 2871.830 kb on + strandat 2871.831 kb on - strandat 2872.102 kb on + strand, within AZOBR_RS13530at 2872.102 kb on + strand, within AZOBR_RS13530at 2872.102 kb on + strand, within AZOBR_RS13530at 2872.102 kb on + strand, within AZOBR_RS13530at 2872.103 kb on - strand, within AZOBR_RS13530at 2872.103 kb on - strand, within AZOBR_RS13530at 2872.103 kb on - strand, within AZOBR_RS13530at 2872.103 kb on - strand, within AZOBR_RS13530at 2872.103 kb on - strand, within AZOBR_RS13530at 2872.103 kb on - strand, within AZOBR_RS13530at 2872.103 kb on - strand, within AZOBR_RS13530at 2872.245 kb on + strandat 2872.245 kb on + strandat 2872.246 kb on - strandat 2872.742 kb on + strandat 2872.847 kb on + strandat 2872.847 kb on + strandat 2872.847 kb on + strandat 2872.847 kb on + strandat 2872.848 kb on - strandat 2872.848 kb on - strandat 2872.871 kb on + strandat 2872.871 kb on + strandat 2872.872 kb on - strandat 2872.872 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-pentyl-furan 1.335528 mM
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2,871,318 + AZOBR_RS13525 0.28 -1.6
2,871,508 - AZOBR_RS13525 0.81 -2.9
2,871,508 - AZOBR_RS13525 0.81 -1.9
2,871,553 + -0.4
2,871,553 + -0.1
2,871,553 + -0.4
2,871,553 + -2.1
2,871,553 + +0.9
2,871,553 + +0.9
2,871,554 - -1.0
2,871,554 - -2.6
2,871,653 + -1.8
2,871,653 + +1.2
2,871,653 + +2.5
2,871,654 - +0.5
2,871,654 - -0.5
2,871,830 + -1.1
2,871,831 - +1.0
2,872,102 + AZOBR_RS13530 0.88 +0.2
2,872,102 + AZOBR_RS13530 0.88 -1.3
2,872,102 + AZOBR_RS13530 0.88 +0.7
2,872,102 + AZOBR_RS13530 0.88 -0.6
2,872,103 - AZOBR_RS13530 0.88 +0.0
2,872,103 - AZOBR_RS13530 0.88 -1.3
2,872,103 - AZOBR_RS13530 0.88 +0.9
2,872,103 - AZOBR_RS13530 0.88 +0.1
2,872,103 - AZOBR_RS13530 0.88 +0.7
2,872,103 - AZOBR_RS13530 0.88 +0.0
2,872,103 - AZOBR_RS13530 0.88 -0.2
2,872,245 + -2.0
2,872,245 + -1.7
2,872,246 - -0.5
2,872,742 + -0.1
2,872,847 + -0.3
2,872,847 + -0.4
2,872,847 + -0.5
2,872,847 + -0.4
2,872,848 - -0.5
2,872,848 - +0.7
2,872,871 + -0.7
2,872,871 + -0.4
2,872,872 - -1.0
2,872,872 - -0.7

Or see this region's nucleotide sequence