Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS13155

Experiment: 2-pentyl-furan 1.335528 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS13150 and AZOBR_RS13155 are separated by 46 nucleotidesAZOBR_RS13155 and AZOBR_RS13160 are separated by 60 nucleotides AZOBR_RS13150: AZOBR_RS13150 - ABC transporter substrate-binding protein, at 2,774,026 to 2,775,030 _RS13150 AZOBR_RS13155: AZOBR_RS13155 - acyl-CoA dehydrogenase, at 2,775,077 to 2,776,303 _RS13155 AZOBR_RS13160: AZOBR_RS13160 - histidine kinase, at 2,776,364 to 2,778,106 _RS13160 Position (kb) 2775 2776 2777Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 2774.690 kb on - strand, within AZOBR_RS13150at 2774.690 kb on - strand, within AZOBR_RS13150at 2774.830 kb on + strand, within AZOBR_RS13150at 2774.830 kb on + strand, within AZOBR_RS13150at 2774.831 kb on - strand, within AZOBR_RS13150at 2774.831 kb on - strand, within AZOBR_RS13150at 2774.831 kb on - strand, within AZOBR_RS13150at 2774.831 kb on - strand, within AZOBR_RS13150at 2774.831 kb on - strand, within AZOBR_RS13150at 2774.831 kb on - strand, within AZOBR_RS13150at 2774.941 kb on + strandat 2774.941 kb on + strandat 2774.942 kb on - strandat 2775.123 kb on + strandat 2775.389 kb on + strand, within AZOBR_RS13155at 2775.389 kb on + strand, within AZOBR_RS13155at 2775.593 kb on + strand, within AZOBR_RS13155at 2775.593 kb on + strand, within AZOBR_RS13155at 2775.887 kb on + strand, within AZOBR_RS13155at 2776.252 kb on + strandat 2776.253 kb on - strandat 2776.253 kb on - strandat 2776.470 kb on + strandat 2776.471 kb on - strandat 2776.687 kb on - strand, within AZOBR_RS13160at 2776.687 kb on - strand, within AZOBR_RS13160at 2776.801 kb on - strand, within AZOBR_RS13160at 2777.127 kb on + strand, within AZOBR_RS13160at 2777.221 kb on - strand, within AZOBR_RS13160at 2777.260 kb on - strand, within AZOBR_RS13160at 2777.260 kb on - strand, within AZOBR_RS13160at 2777.260 kb on - strand, within AZOBR_RS13160at 2777.260 kb on - strand, within AZOBR_RS13160

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-pentyl-furan 1.335528 mM
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2,774,690 - AZOBR_RS13150 0.66 -4.0
2,774,690 - AZOBR_RS13150 0.66 +1.1
2,774,830 + AZOBR_RS13150 0.80 -0.2
2,774,830 + AZOBR_RS13150 0.80 +0.8
2,774,831 - AZOBR_RS13150 0.80 -0.8
2,774,831 - AZOBR_RS13150 0.80 -0.3
2,774,831 - AZOBR_RS13150 0.80 +0.7
2,774,831 - AZOBR_RS13150 0.80 -0.3
2,774,831 - AZOBR_RS13150 0.80 -0.1
2,774,831 - AZOBR_RS13150 0.80 +0.7
2,774,941 + +0.9
2,774,941 + -1.8
2,774,942 - -0.0
2,775,123 + -0.5
2,775,389 + AZOBR_RS13155 0.25 -0.3
2,775,389 + AZOBR_RS13155 0.25 -0.6
2,775,593 + AZOBR_RS13155 0.42 +0.5
2,775,593 + AZOBR_RS13155 0.42 -0.8
2,775,887 + AZOBR_RS13155 0.66 -0.2
2,776,252 + -1.5
2,776,253 - +0.2
2,776,253 - +0.4
2,776,470 + +0.3
2,776,471 - +0.6
2,776,687 - AZOBR_RS13160 0.19 -0.3
2,776,687 - AZOBR_RS13160 0.19 -1.8
2,776,801 - AZOBR_RS13160 0.25 -0.6
2,777,127 + AZOBR_RS13160 0.44 +0.1
2,777,221 - AZOBR_RS13160 0.49 +2.0
2,777,260 - AZOBR_RS13160 0.51 -0.4
2,777,260 - AZOBR_RS13160 0.51 -4.0
2,777,260 - AZOBR_RS13160 0.51 +0.2
2,777,260 - AZOBR_RS13160 0.51 +1.9

Or see this region's nucleotide sequence