Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS10540

Experiment: 2-pentyl-furan 1.335528 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS10530 and AZOBR_RS10535 are separated by 92 nucleotidesAZOBR_RS10535 and AZOBR_RS10540 are separated by 27 nucleotidesAZOBR_RS10540 and AZOBR_RS10545 overlap by 4 nucleotides AZOBR_RS10530: AZOBR_RS10530 - hypothetical protein, at 2,210,025 to 2,210,270 _RS10530 AZOBR_RS10535: AZOBR_RS10535 - GCN5 family N-acetyltransferase, at 2,210,363 to 2,210,953 _RS10535 AZOBR_RS10540: AZOBR_RS10540 - peptidase M16, at 2,210,981 to 2,212,237 _RS10540 AZOBR_RS10545: AZOBR_RS10545 - threonine synthase, at 2,212,234 to 2,213,646 _RS10545 Position (kb) 2210 2211 2212 2213Strain fitness (log2 ratio) -3 -2 -1 0 1at 2210.020 kb on - strandat 2210.022 kb on - strandat 2210.146 kb on + strand, within AZOBR_RS10530at 2210.185 kb on + strand, within AZOBR_RS10530at 2210.185 kb on + strand, within AZOBR_RS10530at 2210.243 kb on + strand, within AZOBR_RS10530at 2210.243 kb on + strand, within AZOBR_RS10530at 2210.244 kb on - strand, within AZOBR_RS10530at 2210.446 kb on - strand, within AZOBR_RS10535at 2210.583 kb on + strand, within AZOBR_RS10535at 2210.584 kb on - strand, within AZOBR_RS10535at 2210.599 kb on - strand, within AZOBR_RS10535at 2210.716 kb on - strand, within AZOBR_RS10535at 2210.886 kb on + strand, within AZOBR_RS10535at 2210.887 kb on - strand, within AZOBR_RS10535at 2210.887 kb on - strand, within AZOBR_RS10535at 2211.009 kb on + strandat 2211.009 kb on + strandat 2211.009 kb on + strandat 2211.151 kb on - strand, within AZOBR_RS10540at 2211.384 kb on + strand, within AZOBR_RS10540at 2211.384 kb on + strand, within AZOBR_RS10540at 2211.384 kb on + strand, within AZOBR_RS10540at 2211.384 kb on + strand, within AZOBR_RS10540at 2211.385 kb on - strand, within AZOBR_RS10540at 2211.385 kb on - strand, within AZOBR_RS10540at 2211.393 kb on + strand, within AZOBR_RS10540at 2211.393 kb on + strand, within AZOBR_RS10540at 2211.394 kb on - strand, within AZOBR_RS10540at 2211.481 kb on - strand, within AZOBR_RS10540at 2211.714 kb on + strand, within AZOBR_RS10540at 2211.975 kb on + strand, within AZOBR_RS10540at 2211.979 kb on - strand, within AZOBR_RS10540at 2212.001 kb on - strand, within AZOBR_RS10540at 2212.001 kb on - strand, within AZOBR_RS10540at 2212.002 kb on + strand, within AZOBR_RS10540

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-pentyl-furan 1.335528 mM
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2,210,020 - -1.5
2,210,022 - +0.0
2,210,146 + AZOBR_RS10530 0.49 -2.6
2,210,185 + AZOBR_RS10530 0.65 -0.1
2,210,185 + AZOBR_RS10530 0.65 -0.8
2,210,243 + AZOBR_RS10530 0.89 -0.5
2,210,243 + AZOBR_RS10530 0.89 +1.3
2,210,244 - AZOBR_RS10530 0.89 -0.2
2,210,446 - AZOBR_RS10535 0.14 -0.3
2,210,583 + AZOBR_RS10535 0.37 -2.6
2,210,584 - AZOBR_RS10535 0.37 +0.7
2,210,599 - AZOBR_RS10535 0.40 -0.8
2,210,716 - AZOBR_RS10535 0.60 -0.6
2,210,886 + AZOBR_RS10535 0.88 -0.2
2,210,887 - AZOBR_RS10535 0.89 -2.3
2,210,887 - AZOBR_RS10535 0.89 +0.2
2,211,009 + +1.2
2,211,009 + +0.2
2,211,009 + -0.9
2,211,151 - AZOBR_RS10540 0.14 +0.1
2,211,384 + AZOBR_RS10540 0.32 -2.0
2,211,384 + AZOBR_RS10540 0.32 +0.8
2,211,384 + AZOBR_RS10540 0.32 -0.5
2,211,384 + AZOBR_RS10540 0.32 -3.1
2,211,385 - AZOBR_RS10540 0.32 +1.3
2,211,385 - AZOBR_RS10540 0.32 +1.0
2,211,393 + AZOBR_RS10540 0.33 -1.4
2,211,393 + AZOBR_RS10540 0.33 -0.3
2,211,394 - AZOBR_RS10540 0.33 -2.2
2,211,481 - AZOBR_RS10540 0.40 +1.2
2,211,714 + AZOBR_RS10540 0.58 -1.5
2,211,975 + AZOBR_RS10540 0.79 -0.0
2,211,979 - AZOBR_RS10540 0.79 -0.5
2,212,001 - AZOBR_RS10540 0.81 +0.7
2,212,001 - AZOBR_RS10540 0.81 +0.4
2,212,002 + AZOBR_RS10540 0.81 +0.7

Or see this region's nucleotide sequence