Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS10520

Experiment: 2-pentyl-furan 1.335528 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS10510 and AZOBR_RS10515 are separated by 149 nucleotidesAZOBR_RS10515 and AZOBR_RS10520 are separated by 29 nucleotidesAZOBR_RS10520 and AZOBR_RS10525 are separated by 158 nucleotidesAZOBR_RS10525 and AZOBR_RS10530 are separated by 73 nucleotides AZOBR_RS10510: AZOBR_RS10510 - amP-dependent synthetase and ligase, at 2,204,873 to 2,206,471 _RS10510 AZOBR_RS10515: AZOBR_RS10515 - alkyl hydroperoxide reductase, at 2,206,621 to 2,207,103 _RS10515 AZOBR_RS10520: AZOBR_RS10520 - copper-resistance protein, at 2,207,133 to 2,209,217 _RS10520 AZOBR_RS10525: AZOBR_RS10525 - hypothetical protein, at 2,209,376 to 2,209,951 _RS10525 AZOBR_RS10530: AZOBR_RS10530 - hypothetical protein, at 2,210,025 to 2,210,270 _RS10530 Position (kb) 2207 2208 2209 2210Strain fitness (log2 ratio) -3 -2 -1 0 1at 2206.167 kb on - strand, within AZOBR_RS10510at 2206.167 kb on - strand, within AZOBR_RS10510at 2206.220 kb on + strand, within AZOBR_RS10510at 2206.221 kb on - strand, within AZOBR_RS10510at 2206.343 kb on + strandat 2206.456 kb on + strandat 2206.481 kb on + strandat 2206.481 kb on + strandat 2206.481 kb on + strandat 2206.481 kb on + strandat 2206.481 kb on + strandat 2206.482 kb on - strandat 2206.482 kb on - strandat 2206.482 kb on - strandat 2206.610 kb on + strandat 2206.623 kb on - strandat 2209.236 kb on - strandat 2209.272 kb on + strandat 2209.272 kb on + strandat 2209.272 kb on + strandat 2209.273 kb on - strandat 2209.273 kb on - strandat 2209.273 kb on - strandat 2209.273 kb on - strandat 2209.274 kb on + strandat 2209.275 kb on - strandat 2209.275 kb on - strandat 2209.362 kb on + strandat 2209.368 kb on + strandat 2209.369 kb on - strandat 2209.472 kb on + strand, within AZOBR_RS10525at 2209.472 kb on + strand, within AZOBR_RS10525at 2209.473 kb on - strand, within AZOBR_RS10525at 2209.473 kb on - strand, within AZOBR_RS10525at 2209.473 kb on - strand, within AZOBR_RS10525at 2209.473 kb on - strand, within AZOBR_RS10525at 2209.473 kb on - strand, within AZOBR_RS10525at 2209.473 kb on - strand, within AZOBR_RS10525at 2209.474 kb on + strand, within AZOBR_RS10525at 2209.474 kb on + strand, within AZOBR_RS10525at 2209.475 kb on - strand, within AZOBR_RS10525at 2209.475 kb on - strand, within AZOBR_RS10525at 2209.475 kb on - strand, within AZOBR_RS10525at 2209.475 kb on - strand, within AZOBR_RS10525at 2209.608 kb on - strand, within AZOBR_RS10525at 2209.659 kb on - strand, within AZOBR_RS10525at 2209.659 kb on - strand, within AZOBR_RS10525at 2209.776 kb on - strand, within AZOBR_RS10525at 2209.776 kb on - strand, within AZOBR_RS10525at 2210.020 kb on - strandat 2210.022 kb on - strandat 2210.146 kb on + strand, within AZOBR_RS10530at 2210.185 kb on + strand, within AZOBR_RS10530at 2210.185 kb on + strand, within AZOBR_RS10530

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-pentyl-furan 1.335528 mM
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2,206,167 - AZOBR_RS10510 0.81 -0.0
2,206,167 - AZOBR_RS10510 0.81 -0.3
2,206,220 + AZOBR_RS10510 0.84 -0.2
2,206,221 - AZOBR_RS10510 0.84 -2.5
2,206,343 + -0.5
2,206,456 + -0.4
2,206,481 + +0.7
2,206,481 + +0.2
2,206,481 + +0.8
2,206,481 + +0.6
2,206,481 + -0.5
2,206,482 - -0.7
2,206,482 - +1.5
2,206,482 - +0.4
2,206,610 + -2.0
2,206,623 - -0.6
2,209,236 - +1.2
2,209,272 + -1.0
2,209,272 + +0.8
2,209,272 + +0.4
2,209,273 - -2.8
2,209,273 - -1.5
2,209,273 - -1.1
2,209,273 - -0.2
2,209,274 + -0.9
2,209,275 - +0.1
2,209,275 - -0.9
2,209,362 + -2.0
2,209,368 + -0.3
2,209,369 - +0.3
2,209,472 + AZOBR_RS10525 0.17 -1.8
2,209,472 + AZOBR_RS10525 0.17 +0.6
2,209,473 - AZOBR_RS10525 0.17 +0.1
2,209,473 - AZOBR_RS10525 0.17 +0.7
2,209,473 - AZOBR_RS10525 0.17 -0.6
2,209,473 - AZOBR_RS10525 0.17 +0.1
2,209,473 - AZOBR_RS10525 0.17 +0.1
2,209,473 - AZOBR_RS10525 0.17 -0.0
2,209,474 + AZOBR_RS10525 0.17 -0.3
2,209,474 + AZOBR_RS10525 0.17 -2.6
2,209,475 - AZOBR_RS10525 0.17 -0.3
2,209,475 - AZOBR_RS10525 0.17 +1.5
2,209,475 - AZOBR_RS10525 0.17 -0.1
2,209,475 - AZOBR_RS10525 0.17 +0.3
2,209,608 - AZOBR_RS10525 0.40 +0.1
2,209,659 - AZOBR_RS10525 0.49 -1.0
2,209,659 - AZOBR_RS10525 0.49 +0.4
2,209,776 - AZOBR_RS10525 0.69 -3.1
2,209,776 - AZOBR_RS10525 0.69 -0.3
2,210,020 - -1.5
2,210,022 - +0.0
2,210,146 + AZOBR_RS10530 0.49 -2.6
2,210,185 + AZOBR_RS10530 0.65 -0.1
2,210,185 + AZOBR_RS10530 0.65 -0.8

Or see this region's nucleotide sequence