Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS08680

Experiment: 2-pentyl-furan 1.335528 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS08675 and AZOBR_RS08680 are separated by 55 nucleotidesAZOBR_RS08680 and AZOBR_RS08685 are separated by 52 nucleotidesAZOBR_RS08685 and AZOBR_RS08690 overlap by 25 nucleotides AZOBR_RS08675: AZOBR_RS08675 - histidinol phosphate aminotransferase, at 1,816,715 to 1,817,800 _RS08675 AZOBR_RS08680: AZOBR_RS08680 - multidrug DMT transporter permease, at 1,817,856 to 1,818,689 _RS08680 AZOBR_RS08685: AZOBR_RS08685 - GNAT family acetyltransferase, at 1,818,742 to 1,819,383 _RS08685 AZOBR_RS08690: AZOBR_RS08690 - acetyltransferase, at 1,819,359 to 1,819,793 _RS08690 Position (kb) 1817 1818 1819Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 1816.857 kb on - strand, within AZOBR_RS08675at 1816.935 kb on - strand, within AZOBR_RS08675at 1817.204 kb on + strand, within AZOBR_RS08675at 1817.204 kb on + strand, within AZOBR_RS08675at 1817.204 kb on + strand, within AZOBR_RS08675at 1817.204 kb on + strand, within AZOBR_RS08675at 1817.204 kb on + strand, within AZOBR_RS08675at 1817.204 kb on + strand, within AZOBR_RS08675at 1817.204 kb on + strand, within AZOBR_RS08675at 1817.205 kb on - strand, within AZOBR_RS08675at 1817.205 kb on - strand, within AZOBR_RS08675at 1817.205 kb on - strand, within AZOBR_RS08675at 1817.279 kb on + strand, within AZOBR_RS08675at 1817.306 kb on + strand, within AZOBR_RS08675at 1817.306 kb on + strandat 1817.307 kb on - strand, within AZOBR_RS08675at 1817.307 kb on - strand, within AZOBR_RS08675at 1817.307 kb on - strand, within AZOBR_RS08675at 1817.594 kb on + strand, within AZOBR_RS08675at 1817.712 kb on - strandat 1818.575 kb on - strand, within AZOBR_RS08680at 1818.998 kb on + strand, within AZOBR_RS08685at 1818.999 kb on - strand, within AZOBR_RS08685at 1819.065 kb on - strand, within AZOBR_RS08685at 1819.065 kb on - strand, within AZOBR_RS08685at 1819.065 kb on - strand, within AZOBR_RS08685at 1819.065 kb on - strand, within AZOBR_RS08685at 1819.065 kb on - strand, within AZOBR_RS08685at 1819.170 kb on - strand, within AZOBR_RS08685at 1819.170 kb on - strand, within AZOBR_RS08685at 1819.182 kb on - strand, within AZOBR_RS08685at 1819.182 kb on - strand, within AZOBR_RS08685at 1819.184 kb on + strand, within AZOBR_RS08685at 1819.185 kb on - strand, within AZOBR_RS08685at 1819.277 kb on + strand, within AZOBR_RS08685at 1819.277 kb on + strand, within AZOBR_RS08685at 1819.429 kb on + strand, within AZOBR_RS08690at 1819.570 kb on + strand, within AZOBR_RS08690at 1819.571 kb on - strand, within AZOBR_RS08690at 1819.573 kb on + strand, within AZOBR_RS08690at 1819.573 kb on + strand, within AZOBR_RS08690at 1819.573 kb on + strand, within AZOBR_RS08690at 1819.574 kb on - strand, within AZOBR_RS08690

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-pentyl-furan 1.335528 mM
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1,816,857 - AZOBR_RS08675 0.13 +0.7
1,816,935 - AZOBR_RS08675 0.20 -0.7
1,817,204 + AZOBR_RS08675 0.45 +0.8
1,817,204 + AZOBR_RS08675 0.45 +0.3
1,817,204 + AZOBR_RS08675 0.45 +0.3
1,817,204 + AZOBR_RS08675 0.45 +0.8
1,817,204 + AZOBR_RS08675 0.45 -0.9
1,817,204 + AZOBR_RS08675 0.45 +0.6
1,817,204 + AZOBR_RS08675 0.45 -0.8
1,817,205 - AZOBR_RS08675 0.45 +0.3
1,817,205 - AZOBR_RS08675 0.45 -0.2
1,817,205 - AZOBR_RS08675 0.45 -0.6
1,817,279 + AZOBR_RS08675 0.52 +0.1
1,817,306 + AZOBR_RS08675 0.54 -0.2
1,817,306 + +0.0
1,817,307 - AZOBR_RS08675 0.55 +0.3
1,817,307 - AZOBR_RS08675 0.55 -0.0
1,817,307 - AZOBR_RS08675 0.55 +1.1
1,817,594 + AZOBR_RS08675 0.81 +0.2
1,817,712 - +0.0
1,818,575 - AZOBR_RS08680 0.86 -2.2
1,818,998 + AZOBR_RS08685 0.40 +0.4
1,818,999 - AZOBR_RS08685 0.40 -1.8
1,819,065 - AZOBR_RS08685 0.50 -0.2
1,819,065 - AZOBR_RS08685 0.50 -3.0
1,819,065 - AZOBR_RS08685 0.50 +0.1
1,819,065 - AZOBR_RS08685 0.50 -3.6
1,819,065 - AZOBR_RS08685 0.50 +0.3
1,819,170 - AZOBR_RS08685 0.67 +0.5
1,819,170 - AZOBR_RS08685 0.67 +0.5
1,819,182 - AZOBR_RS08685 0.69 -0.9
1,819,182 - AZOBR_RS08685 0.69 -0.2
1,819,184 + AZOBR_RS08685 0.69 +0.1
1,819,185 - AZOBR_RS08685 0.69 +0.7
1,819,277 + AZOBR_RS08685 0.83 +0.2
1,819,277 + AZOBR_RS08685 0.83 +1.0
1,819,429 + AZOBR_RS08690 0.16 +0.9
1,819,570 + AZOBR_RS08690 0.49 +0.3
1,819,571 - AZOBR_RS08690 0.49 +1.0
1,819,573 + AZOBR_RS08690 0.49 -1.9
1,819,573 + AZOBR_RS08690 0.49 +4.1
1,819,573 + AZOBR_RS08690 0.49 -1.4
1,819,574 - AZOBR_RS08690 0.49 +0.5

Or see this region's nucleotide sequence