Experiment: 2-pentyl-furan 1.335528 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS08340 and AZOBR_RS08345 are separated by 22 nucleotides AZOBR_RS08345 and AZOBR_RS08350 overlap by 1 nucleotides AZOBR_RS08350 and AZOBR_RS08355 overlap by 23 nucleotides
AZOBR_RS08340: AZOBR_RS08340 - ABC transporter, at 1,753,359 to 1,754,150
_RS08340
AZOBR_RS08345: AZOBR_RS08345 - ABC transporter permease, at 1,754,173 to 1,754,949
_RS08345
AZOBR_RS08350: AZOBR_RS08350 - alanine racemase, at 1,754,949 to 1,756,085
_RS08350
AZOBR_RS08355: AZOBR_RS08355 - replicative DNA helicase, at 1,756,063 to 1,757,595
_RS08355
Position (kb) 1754
1755
1756
1757 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 1754.207 kb on + strand at 1754.208 kb on - strand at 1754.295 kb on - strand, within AZOBR_RS08345 at 1754.402 kb on + strand, within AZOBR_RS08345 at 1754.403 kb on - strand, within AZOBR_RS08345 at 1754.403 kb on - strand, within AZOBR_RS08345 at 1754.403 kb on - strand, within AZOBR_RS08345 at 1754.531 kb on + strand, within AZOBR_RS08345 at 1754.732 kb on + strand, within AZOBR_RS08345 at 1754.733 kb on - strand, within AZOBR_RS08345 at 1754.798 kb on + strand, within AZOBR_RS08345 at 1755.305 kb on + strand at 1755.306 kb on - strand, within AZOBR_RS08350
Per-strain Table
Position Strand Gene LocusTag Fraction 2-pentyl-furan 1.335528 mM remove 1,754,207 + -0.2 1,754,208 - -0.9 1,754,295 - AZOBR_RS08345 0.16 +0.6 1,754,402 + AZOBR_RS08345 0.29 +2.1 1,754,403 - AZOBR_RS08345 0.30 -2.2 1,754,403 - AZOBR_RS08345 0.30 -2.6 1,754,403 - AZOBR_RS08345 0.30 -3.1 1,754,531 + AZOBR_RS08345 0.46 +2.1 1,754,732 + AZOBR_RS08345 0.72 -0.9 1,754,733 - AZOBR_RS08345 0.72 -2.6 1,754,798 + AZOBR_RS08345 0.80 +0.6 1,755,305 + +2.1 1,755,306 - AZOBR_RS08350 0.31 +0.4
Or see this region's nucleotide sequence