Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS07260

Experiment: 2-pentyl-furan 1.335528 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS07245 and AZOBR_RS07250 are separated by 33 nucleotidesAZOBR_RS07250 and AZOBR_RS07255 are separated by 28 nucleotidesAZOBR_RS07255 and AZOBR_RS07260 are separated by 25 nucleotidesAZOBR_RS07260 and AZOBR_RS07265 are separated by 413 nucleotides AZOBR_RS07245: AZOBR_RS07245 - RNA-metabolising metallo-beta-lactamase, at 1,528,835 to 1,530,499 _RS07245 AZOBR_RS07250: AZOBR_RS07250 - methylmalonyl-CoA epimerase, at 1,530,533 to 1,530,937 _RS07250 AZOBR_RS07255: AZOBR_RS07255 - hypothetical protein, at 1,530,966 to 1,531,214 _RS07255 AZOBR_RS07260: AZOBR_RS07260 - DNA-3-methyladenine glycosylase, at 1,531,240 to 1,531,839 _RS07260 AZOBR_RS07265: AZOBR_RS07265 - hypothetical protein, at 1,532,253 to 1,533,137 _RS07265 Position (kb) 1531 1532Strain fitness (log2 ratio) -3 -2 -1 0 1at 1530.495 kb on + strandat 1530.776 kb on + strand, within AZOBR_RS07250at 1530.777 kb on - strand, within AZOBR_RS07250at 1530.994 kb on - strand, within AZOBR_RS07255at 1530.994 kb on - strand, within AZOBR_RS07255at 1530.994 kb on - strand, within AZOBR_RS07255at 1530.994 kb on - strand, within AZOBR_RS07255at 1531.700 kb on - strand, within AZOBR_RS07260at 1531.938 kb on + strandat 1532.082 kb on - strandat 1532.136 kb on + strandat 1532.137 kb on - strandat 1532.137 kb on - strandat 1532.511 kb on + strand, within AZOBR_RS07265at 1532.512 kb on - strand, within AZOBR_RS07265at 1532.733 kb on + strand, within AZOBR_RS07265

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-pentyl-furan 1.335528 mM
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1,530,495 + -0.1
1,530,776 + AZOBR_RS07250 0.60 -0.7
1,530,777 - AZOBR_RS07250 0.60 -0.3
1,530,994 - AZOBR_RS07255 0.11 -1.2
1,530,994 - AZOBR_RS07255 0.11 +0.4
1,530,994 - AZOBR_RS07255 0.11 -1.5
1,530,994 - AZOBR_RS07255 0.11 -3.1
1,531,700 - AZOBR_RS07260 0.77 +0.9
1,531,938 + -0.1
1,532,082 - -1.3
1,532,136 + +1.5
1,532,137 - +0.3
1,532,137 - -0.9
1,532,511 + AZOBR_RS07265 0.29 +0.9
1,532,512 - AZOBR_RS07265 0.29 -0.4
1,532,733 + AZOBR_RS07265 0.54 -0.8

Or see this region's nucleotide sequence