Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS05040

Experiment: 2-pentyl-furan 1.335528 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS05035 and AZOBR_RS05040 are separated by 481 nucleotidesAZOBR_RS05040 and AZOBR_RS05045 are separated by 112 nucleotides AZOBR_RS05035: AZOBR_RS05035 - hypothetical protein, at 1,066,844 to 1,068,049 _RS05035 AZOBR_RS05040: AZOBR_RS05040 - hypothetical protein, at 1,068,531 to 1,069,316 _RS05040 AZOBR_RS05045: AZOBR_RS05045 - glucose-6-phosphate isomerase, at 1,069,429 to 1,071,072 _RS05045 Position (kb) 1068 1069 1070Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1067.644 kb on + strand, within AZOBR_RS05035at 1067.645 kb on - strand, within AZOBR_RS05035at 1067.826 kb on - strand, within AZOBR_RS05035at 1067.978 kb on + strandat 1067.979 kb on - strandat 1067.979 kb on - strandat 1067.984 kb on + strandat 1067.984 kb on + strandat 1067.985 kb on - strandat 1067.985 kb on - strandat 1068.068 kb on + strandat 1068.068 kb on + strandat 1068.262 kb on + strandat 1068.262 kb on + strandat 1068.262 kb on + strandat 1068.262 kb on + strandat 1068.262 kb on + strandat 1068.262 kb on + strandat 1068.262 kb on + strandat 1068.263 kb on - strandat 1068.263 kb on - strandat 1068.263 kb on - strandat 1068.263 kb on - strandat 1068.263 kb on - strandat 1068.278 kb on + strandat 1068.388 kb on + strandat 1068.473 kb on + strandat 1068.474 kb on - strandat 1068.474 kb on - strandat 1068.724 kb on + strand, within AZOBR_RS05040at 1068.724 kb on + strand, within AZOBR_RS05040at 1068.724 kb on + strand, within AZOBR_RS05040at 1068.724 kb on + strand, within AZOBR_RS05040at 1068.725 kb on - strand, within AZOBR_RS05040at 1068.725 kb on - strand, within AZOBR_RS05040at 1068.753 kb on + strand, within AZOBR_RS05040at 1068.754 kb on - strand, within AZOBR_RS05040at 1068.754 kb on - strand, within AZOBR_RS05040at 1068.754 kb on - strand, within AZOBR_RS05040at 1070.066 kb on + strandat 1070.207 kb on + strandat 1070.208 kb on - strandat 1070.208 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-pentyl-furan 1.335528 mM
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1,067,644 + AZOBR_RS05035 0.66 -2.1
1,067,645 - AZOBR_RS05035 0.66 -1.7
1,067,826 - AZOBR_RS05035 0.81 +0.1
1,067,978 + -2.7
1,067,979 - -0.4
1,067,979 - +0.3
1,067,984 + -0.3
1,067,984 + -0.1
1,067,985 - -0.9
1,067,985 - +1.1
1,068,068 + -0.9
1,068,068 + +0.6
1,068,262 + +1.3
1,068,262 + -0.0
1,068,262 + +2.2
1,068,262 + -1.7
1,068,262 + +1.0
1,068,262 + -2.7
1,068,262 + -1.7
1,068,263 - -0.7
1,068,263 - -1.6
1,068,263 - +0.5
1,068,263 - -0.5
1,068,263 - +0.3
1,068,278 + -1.0
1,068,388 + +1.0
1,068,473 + -1.8
1,068,474 - -1.6
1,068,474 - +0.3
1,068,724 + AZOBR_RS05040 0.25 -0.8
1,068,724 + AZOBR_RS05040 0.25 +0.4
1,068,724 + AZOBR_RS05040 0.25 -0.6
1,068,724 + AZOBR_RS05040 0.25 -1.2
1,068,725 - AZOBR_RS05040 0.25 -2.0
1,068,725 - AZOBR_RS05040 0.25 -0.4
1,068,753 + AZOBR_RS05040 0.28 -0.8
1,068,754 - AZOBR_RS05040 0.28 -3.5
1,068,754 - AZOBR_RS05040 0.28 +0.6
1,068,754 - AZOBR_RS05040 0.28 +0.6
1,070,066 + +1.0
1,070,207 + +2.0
1,070,208 - +2.0
1,070,208 - +1.0

Or see this region's nucleotide sequence