Experiment: 2-pentyl-furan 1.335528 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS04220 and AZOBR_RS04225 are separated by 142 nucleotides AZOBR_RS04225 and AZOBR_RS04230 are separated by 99 nucleotides AZOBR_RS04230 and AZOBR_RS04235 are separated by 402 nucleotides
AZOBR_RS04220: AZOBR_RS04220 - hypothetical protein, at 888,538 to 889,107
_RS04220
AZOBR_RS04225: AZOBR_RS04225 - isoprenoid biosynthesis protein, at 889,250 to 889,918
_RS04225
AZOBR_RS04230: AZOBR_RS04230 - indole-3-pyruvate decarboxylase, at 890,018 to 891,655
_RS04230
AZOBR_RS04235: AZOBR_RS04235 - glutamyl-tRNA synthetase, at 892,058 to 893,416
_RS04235
Position (kb) 890
891
892 Strain fitness (log2 ratio) -2
-1
0
1
2 at 889.163 kb on + strand at 889.251 kb on + strand at 889.252 kb on - strand at 889.329 kb on + strand, within AZOBR_RS04225 at 889.329 kb on + strand, within AZOBR_RS04225 at 889.329 kb on + strand, within AZOBR_RS04225 at 889.330 kb on - strand, within AZOBR_RS04225 at 889.330 kb on - strand, within AZOBR_RS04225 at 889.330 kb on - strand, within AZOBR_RS04225 at 889.330 kb on - strand, within AZOBR_RS04225 at 889.867 kb on - strand at 889.867 kb on - strand at 889.867 kb on - strand at 889.983 kb on - strand at 889.983 kb on - strand at 889.999 kb on + strand at 889.999 kb on + strand at 889.999 kb on + strand at 890.000 kb on - strand at 890.000 kb on - strand at 890.005 kb on + strand at 890.019 kb on + strand at 890.721 kb on + strand, within AZOBR_RS04230 at 890.730 kb on + strand, within AZOBR_RS04230 at 890.895 kb on + strand, within AZOBR_RS04230 at 890.896 kb on - strand, within AZOBR_RS04230 at 890.896 kb on - strand, within AZOBR_RS04230 at 890.896 kb on - strand, within AZOBR_RS04230 at 890.896 kb on - strand, within AZOBR_RS04230 at 891.009 kb on + strand, within AZOBR_RS04230 at 891.396 kb on + strand, within AZOBR_RS04230 at 891.441 kb on + strand, within AZOBR_RS04230 at 891.441 kb on + strand, within AZOBR_RS04230 at 891.442 kb on - strand, within AZOBR_RS04230 at 891.442 kb on - strand, within AZOBR_RS04230 at 891.442 kb on - strand, within AZOBR_RS04230 at 892.017 kb on + strand at 892.017 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 2-pentyl-furan 1.335528 mM remove 889,163 + -0.5 889,251 + -1.8 889,252 - -0.3 889,329 + AZOBR_RS04225 0.12 +1.2 889,329 + AZOBR_RS04225 0.12 -2.2 889,329 + AZOBR_RS04225 0.12 +0.2 889,330 - AZOBR_RS04225 0.12 +0.7 889,330 - AZOBR_RS04225 0.12 -0.1 889,330 - AZOBR_RS04225 0.12 +1.0 889,330 - AZOBR_RS04225 0.12 +1.1 889,867 - -0.0 889,867 - -1.7 889,867 - -1.6 889,983 - -0.2 889,983 - -0.5 889,999 + -2.0 889,999 + +0.2 889,999 + +1.1 890,000 - -0.7 890,000 - -0.5 890,005 + -0.1 890,019 + +0.6 890,721 + AZOBR_RS04230 0.43 -1.0 890,730 + AZOBR_RS04230 0.43 +1.7 890,895 + AZOBR_RS04230 0.54 +1.4 890,896 - AZOBR_RS04230 0.54 +1.3 890,896 - AZOBR_RS04230 0.54 +1.9 890,896 - AZOBR_RS04230 0.54 -0.6 890,896 - AZOBR_RS04230 0.54 -0.1 891,009 + AZOBR_RS04230 0.61 +0.4 891,396 + AZOBR_RS04230 0.84 +0.1 891,441 + AZOBR_RS04230 0.87 -0.9 891,441 + AZOBR_RS04230 0.87 +1.1 891,442 - AZOBR_RS04230 0.87 -1.1 891,442 - AZOBR_RS04230 0.87 -0.3 891,442 - AZOBR_RS04230 0.87 -0.9 892,017 + -1.3 892,017 + -0.1
Or see this region's nucleotide sequence