Experiment: 2-pentyl-furan 1.335528 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS26960 and AZOBR_RS26965 are separated by 523 nucleotides AZOBR_RS26965 and AZOBR_RS26970 are separated by 92 nucleotides AZOBR_RS26970 and AZOBR_RS26975 are separated by 172 nucleotides
AZOBR_RS26960: AZOBR_RS26960 - hypothetical protein, at 194,304 to 196,016
_RS26960
AZOBR_RS26965: AZOBR_RS26965 - 30S ribosomal protein S21, at 196,540 to 196,743
_RS26965
AZOBR_RS26970: AZOBR_RS26970 - translation initiation factor IF-3, at 196,836 to 197,369
_RS26970
AZOBR_RS26975: AZOBR_RS26975 - secretion protein HylD, at 197,542 to 198,684
_RS26975
Position (kb) 196
197 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 195.567 kb on + strand, within AZOBR_RS26960 at 195.567 kb on + strand, within AZOBR_RS26960 at 195.567 kb on + strand, within AZOBR_RS26960 at 195.567 kb on + strand, within AZOBR_RS26960 at 195.567 kb on + strand, within AZOBR_RS26960 at 195.568 kb on - strand, within AZOBR_RS26960 at 196.282 kb on + strand at 196.282 kb on + strand at 196.282 kb on + strand at 196.282 kb on + strand at 196.283 kb on - strand at 196.283 kb on - strand at 196.283 kb on - strand at 196.283 kb on - strand at 196.837 kb on + strand at 196.842 kb on - strand at 197.398 kb on + strand at 197.398 kb on + strand at 197.399 kb on - strand at 197.511 kb on + strand at 197.512 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 2-pentyl-furan 1.335528 mM remove 195,567 + AZOBR_RS26960 0.74 -0.3 195,567 + AZOBR_RS26960 0.74 -3.2 195,567 + AZOBR_RS26960 0.74 +2.0 195,567 + AZOBR_RS26960 0.74 -1.9 195,567 + AZOBR_RS26960 0.74 +0.2 195,568 - AZOBR_RS26960 0.74 -0.6 196,282 + -0.4 196,282 + -0.3 196,282 + +1.2 196,282 + -0.2 196,283 - +1.0 196,283 - +0.4 196,283 - +0.5 196,283 - +0.2 196,837 + -2.4 196,842 - +1.0 197,398 + -0.2 197,398 + -0.5 197,399 - -0.8 197,511 + -2.6 197,512 - -0.3
Or see this region's nucleotide sequence