Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS21915

Experiment: 2-pentyl-furan 1.335528 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS21910 and AZOBR_RS21915 are separated by 31 nucleotidesAZOBR_RS21915 and AZOBR_RS21920 are separated by 127 nucleotidesAZOBR_RS21920 and AZOBR_RS21925 are separated by 67 nucleotides AZOBR_RS21910: AZOBR_RS21910 - methyltransferase, at 1,689,600 to 1,690,979 _RS21910 AZOBR_RS21915: AZOBR_RS21915 - LysR family transcriptional regulator, at 1,691,011 to 1,691,949 _RS21915 AZOBR_RS21920: AZOBR_RS21920 - NAD(P)H quinone oxidoreductase, at 1,692,077 to 1,692,679 _RS21920 AZOBR_RS21925: AZOBR_RS21925 - glutathione S-transferase, at 1,692,747 to 1,693,694 _RS21925 Position (kb) 1691 1692Strain fitness (log2 ratio) -2 -1 0 1 2at 1690.347 kb on + strand, within AZOBR_RS21910at 1690.348 kb on - strand, within AZOBR_RS21910at 1690.348 kb on - strand, within AZOBR_RS21910at 1690.372 kb on - strandat 1690.611 kb on + strand, within AZOBR_RS21910at 1690.612 kb on - strand, within AZOBR_RS21910at 1690.612 kb on - strand, within AZOBR_RS21910at 1690.668 kb on + strand, within AZOBR_RS21910at 1690.669 kb on - strand, within AZOBR_RS21910at 1690.854 kb on + strandat 1690.855 kb on - strandat 1690.955 kb on + strandat 1690.955 kb on + strandat 1690.956 kb on - strandat 1690.956 kb on - strandat 1690.958 kb on - strandat 1691.168 kb on + strand, within AZOBR_RS21915at 1691.168 kb on + strand, within AZOBR_RS21915at 1691.168 kb on + strand, within AZOBR_RS21915at 1691.168 kb on + strand, within AZOBR_RS21915at 1691.169 kb on - strand, within AZOBR_RS21915at 1691.169 kb on - strand, within AZOBR_RS21915at 1691.169 kb on - strand, within AZOBR_RS21915at 1691.169 kb on - strand, within AZOBR_RS21915at 1691.169 kb on - strand, within AZOBR_RS21915at 1691.169 kb on - strand, within AZOBR_RS21915at 1691.171 kb on + strand, within AZOBR_RS21915at 1691.171 kb on + strand, within AZOBR_RS21915at 1691.534 kb on + strand, within AZOBR_RS21915at 1691.558 kb on + strand, within AZOBR_RS21915at 1691.559 kb on - strand, within AZOBR_RS21915at 1691.753 kb on + strand, within AZOBR_RS21915at 1691.753 kb on + strand, within AZOBR_RS21915at 1691.754 kb on - strand, within AZOBR_RS21915at 1691.757 kb on - strand, within AZOBR_RS21915at 1691.920 kb on - strandat 1692.098 kb on + strandat 1692.098 kb on + strandat 1692.098 kb on + strandat 1692.099 kb on - strandat 1692.102 kb on - strandat 1692.284 kb on + strand, within AZOBR_RS21920at 1692.285 kb on - strand, within AZOBR_RS21920

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-pentyl-furan 1.335528 mM
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1,690,347 + AZOBR_RS21910 0.54 -0.2
1,690,348 - AZOBR_RS21910 0.54 -0.2
1,690,348 - AZOBR_RS21910 0.54 -1.2
1,690,372 - -1.1
1,690,611 + AZOBR_RS21910 0.73 +0.1
1,690,612 - AZOBR_RS21910 0.73 +0.5
1,690,612 - AZOBR_RS21910 0.73 +0.2
1,690,668 + AZOBR_RS21910 0.77 -0.4
1,690,669 - AZOBR_RS21910 0.77 +0.3
1,690,854 + +0.6
1,690,855 - -0.5
1,690,955 + -0.4
1,690,955 + -0.6
1,690,956 - +0.0
1,690,956 - +0.4
1,690,958 - -1.0
1,691,168 + AZOBR_RS21915 0.17 +0.5
1,691,168 + AZOBR_RS21915 0.17 -0.2
1,691,168 + AZOBR_RS21915 0.17 +0.5
1,691,168 + AZOBR_RS21915 0.17 +2.1
1,691,169 - AZOBR_RS21915 0.17 -0.1
1,691,169 - AZOBR_RS21915 0.17 -1.4
1,691,169 - AZOBR_RS21915 0.17 -1.2
1,691,169 - AZOBR_RS21915 0.17 -1.2
1,691,169 - AZOBR_RS21915 0.17 -1.3
1,691,169 - AZOBR_RS21915 0.17 -1.1
1,691,171 + AZOBR_RS21915 0.17 -1.8
1,691,171 + AZOBR_RS21915 0.17 +0.5
1,691,534 + AZOBR_RS21915 0.56 -0.8
1,691,558 + AZOBR_RS21915 0.58 -0.2
1,691,559 - AZOBR_RS21915 0.58 +1.2
1,691,753 + AZOBR_RS21915 0.79 +0.5
1,691,753 + AZOBR_RS21915 0.79 -1.2
1,691,754 - AZOBR_RS21915 0.79 -1.6
1,691,757 - AZOBR_RS21915 0.79 -2.1
1,691,920 - +1.1
1,692,098 + +0.1
1,692,098 + -0.9
1,692,098 + -1.9
1,692,099 - -0.9
1,692,102 - +0.1
1,692,284 + AZOBR_RS21920 0.34 +0.2
1,692,285 - AZOBR_RS21920 0.34 -1.9

Or see this region's nucleotide sequence