Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS21710

Experiment: 2-pentyl-furan 1.335528 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS21705 and AZOBR_RS21710 overlap by 4 nucleotidesAZOBR_RS21710 and AZOBR_RS21715 are separated by 8 nucleotidesAZOBR_RS21715 and AZOBR_RS21720 are separated by 233 nucleotides AZOBR_RS21705: AZOBR_RS21705 - 2-aminobenzoate-CoA ligase, at 1,646,389 to 1,648,026 _RS21705 AZOBR_RS21710: AZOBR_RS21710 - conserved membrane protein of unknown function, at 1,648,023 to 1,648,436 _RS21710 AZOBR_RS21715: AZOBR_RS21715 - hypothetical protein, at 1,648,445 to 1,649,116 _RS21715 AZOBR_RS21720: AZOBR_RS21720 - hypothetical protein, at 1,649,350 to 1,650,225 _RS21720 Position (kb) 1648 1649Strain fitness (log2 ratio) -2 -1 0 1at 1647.616 kb on + strand, within AZOBR_RS21705at 1647.616 kb on + strand, within AZOBR_RS21705at 1647.617 kb on - strand, within AZOBR_RS21705at 1647.892 kb on + strandat 1648.197 kb on + strand, within AZOBR_RS21710at 1648.198 kb on - strand, within AZOBR_RS21710at 1648.198 kb on - strand, within AZOBR_RS21710at 1648.198 kb on - strand, within AZOBR_RS21710at 1648.338 kb on + strand, within AZOBR_RS21710at 1648.438 kb on + strandat 1648.551 kb on + strand, within AZOBR_RS21715at 1648.551 kb on + strand, within AZOBR_RS21715at 1648.552 kb on - strand, within AZOBR_RS21715at 1648.788 kb on + strand, within AZOBR_RS21715at 1648.788 kb on + strand, within AZOBR_RS21715at 1648.788 kb on + strand, within AZOBR_RS21715at 1648.789 kb on - strand, within AZOBR_RS21715at 1648.789 kb on - strand, within AZOBR_RS21715at 1648.789 kb on - strand, within AZOBR_RS21715at 1648.929 kb on + strand, within AZOBR_RS21715at 1649.265 kb on - strandat 1649.273 kb on + strandat 1649.273 kb on + strandat 1649.315 kb on + strandat 1649.315 kb on + strandat 1649.315 kb on + strandat 1649.315 kb on + strandat 1649.316 kb on - strandat 1649.348 kb on + strandat 1649.348 kb on + strandat 1649.348 kb on + strandat 1649.348 kb on + strandat 1649.349 kb on - strandat 1649.349 kb on - strandat 1649.349 kb on - strandat 1649.432 kb on + strandat 1649.432 kb on + strandat 1649.432 kb on + strandat 1649.433 kb on - strandat 1649.433 kb on - strandat 1649.433 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-pentyl-furan 1.335528 mM
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1,647,616 + AZOBR_RS21705 0.75 -1.5
1,647,616 + AZOBR_RS21705 0.75 -0.2
1,647,617 - AZOBR_RS21705 0.75 -0.3
1,647,892 + +0.6
1,648,197 + AZOBR_RS21710 0.42 -0.3
1,648,198 - AZOBR_RS21710 0.42 -0.7
1,648,198 - AZOBR_RS21710 0.42 -0.4
1,648,198 - AZOBR_RS21710 0.42 -0.6
1,648,338 + AZOBR_RS21710 0.76 -1.1
1,648,438 + +1.1
1,648,551 + AZOBR_RS21715 0.16 +1.1
1,648,551 + AZOBR_RS21715 0.16 -1.7
1,648,552 - AZOBR_RS21715 0.16 -0.1
1,648,788 + AZOBR_RS21715 0.51 -0.6
1,648,788 + AZOBR_RS21715 0.51 +1.5
1,648,788 + AZOBR_RS21715 0.51 -0.6
1,648,789 - AZOBR_RS21715 0.51 +0.5
1,648,789 - AZOBR_RS21715 0.51 -1.0
1,648,789 - AZOBR_RS21715 0.51 -0.4
1,648,929 + AZOBR_RS21715 0.72 +0.5
1,649,265 - -1.3
1,649,273 + -0.3
1,649,273 + +0.8
1,649,315 + +0.6
1,649,315 + +0.2
1,649,315 + +0.5
1,649,315 + +0.8
1,649,316 - +0.7
1,649,348 + -0.3
1,649,348 + -0.8
1,649,348 + +1.5
1,649,348 + -2.4
1,649,349 - -0.9
1,649,349 - +1.4
1,649,349 - +1.2
1,649,432 + -0.1
1,649,432 + -0.1
1,649,432 + -0.8
1,649,433 - +0.1
1,649,433 - -0.6
1,649,433 - +0.1

Or see this region's nucleotide sequence