Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS18205

Experiment: 2-pentyl-furan 1.335528 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS18200 and AZOBR_RS18205 are separated by 230 nucleotidesAZOBR_RS18205 and AZOBR_RS18210 are separated by 771 nucleotides AZOBR_RS18200: AZOBR_RS18200 - hypothetical protein, at 843,694 to 846,412 _RS18200 AZOBR_RS18205: AZOBR_RS18205 - outer membrane efflux protein, at 846,643 to 847,959 _RS18205 AZOBR_RS18210: AZOBR_RS18210 - ATP-binding cassette subfamily C (fragment), at 848,731 to 849,657 _RS18210 Position (kb) 846 847 848Strain fitness (log2 ratio) -1 0 1at 846.464 kb on + strandat 846.489 kb on - strandat 846.505 kb on + strandat 846.520 kb on - strandat 848.073 kb on + strandat 848.074 kb on - strandat 848.945 kb on - strand, within AZOBR_RS18210

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-pentyl-furan 1.335528 mM
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846,464 + +0.9
846,489 - -1.5
846,505 + +0.8
846,520 - -0.1
848,073 + -0.4
848,074 - +0.2
848,945 - AZOBR_RS18210 0.23 -0.1

Or see this region's nucleotide sequence