Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS16795

Experiment: 2-pentyl-furan 1.335528 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAZOBR_RS16790 and AZOBR_RS16795 are separated by 315 nucleotidesAZOBR_RS16795 and AZOBR_RS16800 are separated by 78 nucleotides AZOBR_RS16790: AZOBR_RS16790 - hypothetical protein, at 523,747 to 525,291 _RS16790 AZOBR_RS16795: AZOBR_RS16795 - hypothetical protein, at 525,607 to 527,181 _RS16795 AZOBR_RS16800: AZOBR_RS16800 - flagellar hook protein, at 527,260 to 528,666 _RS16800 Position (kb) 525 526 527 528Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 524.614 kb on + strand, within AZOBR_RS16790at 524.614 kb on + strand, within AZOBR_RS16790at 524.615 kb on - strand, within AZOBR_RS16790at 524.662 kb on + strand, within AZOBR_RS16790at 524.662 kb on + strand, within AZOBR_RS16790at 524.662 kb on + strand, within AZOBR_RS16790at 524.662 kb on + strand, within AZOBR_RS16790at 524.663 kb on - strand, within AZOBR_RS16790at 524.737 kb on + strand, within AZOBR_RS16790at 524.826 kb on + strand, within AZOBR_RS16790at 524.827 kb on - strand, within AZOBR_RS16790at 525.074 kb on + strand, within AZOBR_RS16790at 525.075 kb on - strand, within AZOBR_RS16790at 525.075 kb on - strand, within AZOBR_RS16790at 525.075 kb on - strand, within AZOBR_RS16790at 525.093 kb on + strand, within AZOBR_RS16790at 525.216 kb on + strandat 525.248 kb on - strandat 525.248 kb on - strandat 525.308 kb on - strandat 525.412 kb on + strandat 525.412 kb on + strandat 525.413 kb on - strandat 525.458 kb on - strandat 525.472 kb on - strandat 525.664 kb on + strandat 525.664 kb on + strandat 525.664 kb on + strandat 525.664 kb on + strandat 525.664 kb on + strandat 525.665 kb on - strandat 525.665 kb on - strandat 525.665 kb on - strandat 525.665 kb on - strandat 525.665 kb on - strandat 525.665 kb on - strandat 525.736 kb on + strandat 525.736 kb on + strandat 525.736 kb on + strandat 525.737 kb on - strandat 525.737 kb on - strandat 525.737 kb on - strandat 525.737 kb on - strandat 525.737 kb on - strandat 525.895 kb on - strand, within AZOBR_RS16795at 525.998 kb on - strand, within AZOBR_RS16795at 525.998 kb on - strand, within AZOBR_RS16795at 526.245 kb on + strand, within AZOBR_RS16795at 526.246 kb on - strand, within AZOBR_RS16795at 526.246 kb on - strand, within AZOBR_RS16795at 526.327 kb on + strand, within AZOBR_RS16795at 526.328 kb on - strand, within AZOBR_RS16795at 526.328 kb on - strand, within AZOBR_RS16795at 526.347 kb on + strand, within AZOBR_RS16795at 526.360 kb on + strand, within AZOBR_RS16795at 526.360 kb on + strand, within AZOBR_RS16795at 526.361 kb on - strand, within AZOBR_RS16795at 526.416 kb on + strand, within AZOBR_RS16795at 526.417 kb on - strand, within AZOBR_RS16795at 526.518 kb on + strand, within AZOBR_RS16795at 526.519 kb on - strand, within AZOBR_RS16795at 526.831 kb on + strand, within AZOBR_RS16795at 526.831 kb on + strand, within AZOBR_RS16795at 526.831 kb on + strand, within AZOBR_RS16795at 526.832 kb on - strand, within AZOBR_RS16795at 526.832 kb on - strand, within AZOBR_RS16795at 526.846 kb on + strand, within AZOBR_RS16795at 526.847 kb on - strand, within AZOBR_RS16795at 526.876 kb on + strand, within AZOBR_RS16795at 526.966 kb on + strand, within AZOBR_RS16795at 526.966 kb on + strand, within AZOBR_RS16795at 526.967 kb on - strand, within AZOBR_RS16795at 527.110 kb on + strandat 527.111 kb on - strandat 527.111 kb on - strandat 527.232 kb on + strandat 527.510 kb on - strand, within AZOBR_RS16800at 527.510 kb on - strand, within AZOBR_RS16800at 527.510 kb on - strand, within AZOBR_RS16800at 527.570 kb on - strand, within AZOBR_RS16800at 527.635 kb on + strand, within AZOBR_RS16800at 527.636 kb on - strand, within AZOBR_RS16800at 527.872 kb on + strand, within AZOBR_RS16800at 527.872 kb on + strand, within AZOBR_RS16800at 527.872 kb on + strand, within AZOBR_RS16800at 527.872 kb on + strand, within AZOBR_RS16800at 527.873 kb on - strand, within AZOBR_RS16800at 527.873 kb on - strand, within AZOBR_RS16800at 527.873 kb on - strand, within AZOBR_RS16800at 527.971 kb on + strand, within AZOBR_RS16800at 527.972 kb on - strand, within AZOBR_RS16800at 527.972 kb on - strand, within AZOBR_RS16800

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 2-pentyl-furan 1.335528 mM
remove
524,614 + AZOBR_RS16790 0.56 -1.8
524,614 + AZOBR_RS16790 0.56 -0.6
524,615 - AZOBR_RS16790 0.56 -0.6
524,662 + AZOBR_RS16790 0.59 -0.5
524,662 + AZOBR_RS16790 0.59 -0.3
524,662 + AZOBR_RS16790 0.59 -0.6
524,662 + AZOBR_RS16790 0.59 -0.9
524,663 - AZOBR_RS16790 0.59 -2.4
524,737 + AZOBR_RS16790 0.64 +0.2
524,826 + AZOBR_RS16790 0.70 -0.8
524,827 - AZOBR_RS16790 0.70 +2.0
525,074 + AZOBR_RS16790 0.86 -0.2
525,075 - AZOBR_RS16790 0.86 +1.0
525,075 - AZOBR_RS16790 0.86 -0.3
525,075 - AZOBR_RS16790 0.86 -0.8
525,093 + AZOBR_RS16790 0.87 -2.3
525,216 + +0.5
525,248 - +0.5
525,248 - -1.1
525,308 - +0.6
525,412 + -0.2
525,412 + -0.5
525,413 - -0.3
525,458 - -0.3
525,472 - -0.8
525,664 + -2.2
525,664 + -0.6
525,664 + -3.3
525,664 + -0.0
525,664 + -0.7
525,665 - -0.5
525,665 - -2.0
525,665 - +0.0
525,665 - +0.0
525,665 - +0.5
525,665 - +1.0
525,736 + +0.2
525,736 + +0.5
525,736 + -0.8
525,737 - -1.0
525,737 - -0.9
525,737 - -1.7
525,737 - -2.3
525,737 - +0.3
525,895 - AZOBR_RS16795 0.18 +1.0
525,998 - AZOBR_RS16795 0.25 -0.5
525,998 - AZOBR_RS16795 0.25 -0.3
526,245 + AZOBR_RS16795 0.41 -0.6
526,246 - AZOBR_RS16795 0.41 -0.8
526,246 - AZOBR_RS16795 0.41 +0.9
526,327 + AZOBR_RS16795 0.46 -0.1
526,328 - AZOBR_RS16795 0.46 +0.6
526,328 - AZOBR_RS16795 0.46 -2.0
526,347 + AZOBR_RS16795 0.47 +0.1
526,360 + AZOBR_RS16795 0.48 +0.1
526,360 + AZOBR_RS16795 0.48 -3.2
526,361 - AZOBR_RS16795 0.48 -1.4
526,416 + AZOBR_RS16795 0.51 -0.3
526,417 - AZOBR_RS16795 0.51 -1.0
526,518 + AZOBR_RS16795 0.58 -1.1
526,519 - AZOBR_RS16795 0.58 -1.0
526,831 + AZOBR_RS16795 0.78 -1.4
526,831 + AZOBR_RS16795 0.78 -0.5
526,831 + AZOBR_RS16795 0.78 -1.3
526,832 - AZOBR_RS16795 0.78 -0.2
526,832 - AZOBR_RS16795 0.78 -0.6
526,846 + AZOBR_RS16795 0.79 -2.7
526,847 - AZOBR_RS16795 0.79 +2.0
526,876 + AZOBR_RS16795 0.81 -1.5
526,966 + AZOBR_RS16795 0.86 -0.5
526,966 + AZOBR_RS16795 0.86 -0.4
526,967 - AZOBR_RS16795 0.86 +1.3
527,110 + -0.1
527,111 - +0.0
527,111 - +0.0
527,232 + +1.2
527,510 - AZOBR_RS16800 0.18 -2.0
527,510 - AZOBR_RS16800 0.18 -3.3
527,510 - AZOBR_RS16800 0.18 -2.4
527,570 - AZOBR_RS16800 0.22 -1.8
527,635 + AZOBR_RS16800 0.27 -2.5
527,636 - AZOBR_RS16800 0.27 -0.3
527,872 + AZOBR_RS16800 0.43 -1.5
527,872 + AZOBR_RS16800 0.43 -2.6
527,872 + AZOBR_RS16800 0.43 -0.8
527,872 + AZOBR_RS16800 0.43 -1.8
527,873 - AZOBR_RS16800 0.44 -2.1
527,873 - AZOBR_RS16800 0.44 -2.0
527,873 - AZOBR_RS16800 0.44 -1.1
527,971 + AZOBR_RS16800 0.51 -2.7
527,972 - AZOBR_RS16800 0.51 -1.7
527,972 - AZOBR_RS16800 0.51 +0.0

Or see this region's nucleotide sequence