Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS16775

Experiment: 2-pentyl-furan 1.335528 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS16770 and AZOBR_RS16775 are separated by 25 nucleotides AZOBR_RS16770: AZOBR_RS16770 - histidine kinase, at 518,865 to 521,336 _RS16770 AZOBR_RS16775: AZOBR_RS16775 - hypothetical protein, at 521,362 to 521,694 _RS16775 Position (kb) 521 522Strain fitness (log2 ratio) -1 0 1 2at 520.703 kb on - strand, within AZOBR_RS16770at 520.857 kb on + strand, within AZOBR_RS16770at 520.857 kb on + strand, within AZOBR_RS16770at 520.858 kb on - strand, within AZOBR_RS16770at 520.858 kb on - strand, within AZOBR_RS16770at 520.894 kb on - strand, within AZOBR_RS16770at 520.894 kb on - strand, within AZOBR_RS16770at 520.894 kb on - strand, within AZOBR_RS16770at 520.957 kb on - strand, within AZOBR_RS16770at 521.199 kb on + strandat 521.456 kb on + strand, within AZOBR_RS16775at 521.456 kb on + strand, within AZOBR_RS16775at 521.456 kb on + strand, within AZOBR_RS16775at 521.456 kb on + strand, within AZOBR_RS16775at 521.456 kb on + strand, within AZOBR_RS16775at 521.457 kb on - strand, within AZOBR_RS16775at 521.750 kb on + strandat 521.750 kb on + strandat 521.751 kb on - strandat 522.672 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-pentyl-furan 1.335528 mM
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520,703 - AZOBR_RS16770 0.74 +0.8
520,857 + AZOBR_RS16770 0.81 +0.3
520,857 + AZOBR_RS16770 0.81 -1.1
520,858 - AZOBR_RS16770 0.81 +2.0
520,858 - AZOBR_RS16770 0.81 -1.0
520,894 - AZOBR_RS16770 0.82 -0.5
520,894 - AZOBR_RS16770 0.82 +0.2
520,894 - AZOBR_RS16770 0.82 -0.3
520,957 - AZOBR_RS16770 0.85 -0.0
521,199 + -0.5
521,456 + AZOBR_RS16775 0.28 +0.7
521,456 + AZOBR_RS16775 0.28 +0.3
521,456 + AZOBR_RS16775 0.28 +0.1
521,456 + AZOBR_RS16775 0.28 -1.0
521,456 + AZOBR_RS16775 0.28 +0.3
521,457 - AZOBR_RS16775 0.29 +0.0
521,750 + -1.2
521,750 + +0.1
521,751 - -0.1
522,672 + -0.2

Or see this region's nucleotide sequence