Experiment: 2-pentyl-furan 1.335528 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS15450 and AZOBR_RS15455 are separated by 768 nucleotides AZOBR_RS15455 and AZOBR_RS15460 are separated by 28 nucleotides AZOBR_RS15460 and AZOBR_RS15465 overlap by 1 nucleotides
AZOBR_RS15450: AZOBR_RS15450 - gamma-D-glutamyl-meso-diaminopimelate peptidase, at 226,397 to 226,900
_RS15450
AZOBR_RS15455: AZOBR_RS15455 - protein-L-isoaspartate O-methyltransferase, at 227,669 to 228,322
_RS15455
AZOBR_RS15460: AZOBR_RS15460 - 5'-nucleotidase, at 228,351 to 229,133
_RS15460
AZOBR_RS15465: AZOBR_RS15465 - seryl-tRNA synthetase, at 229,133 to 230,398
_RS15465
Position (kb) 227
228
229 Strain fitness (log2 ratio) -2
-1
0
1
2 at 227.332 kb on + strand at 227.359 kb on + strand at 227.359 kb on + strand at 227.458 kb on + strand at 227.458 kb on + strand at 227.459 kb on - strand at 227.712 kb on - strand at 227.743 kb on + strand, within AZOBR_RS15455 at 227.743 kb on + strand, within AZOBR_RS15455 at 227.744 kb on - strand, within AZOBR_RS15455 at 228.406 kb on + strand at 228.500 kb on + strand, within AZOBR_RS15460 at 228.502 kb on + strand, within AZOBR_RS15460 at 228.502 kb on + strand, within AZOBR_RS15460 at 228.502 kb on + strand, within AZOBR_RS15460 at 228.503 kb on - strand, within AZOBR_RS15460 at 228.503 kb on - strand, within AZOBR_RS15460 at 228.503 kb on - strand, within AZOBR_RS15460 at 228.632 kb on - strand, within AZOBR_RS15460 at 228.721 kb on + strand, within AZOBR_RS15460 at 228.793 kb on + strand, within AZOBR_RS15460
Per-strain Table
Position Strand Gene LocusTag Fraction 2-pentyl-furan 1.335528 mM remove 227,332 + +0.5 227,359 + +2.0 227,359 + +2.0 227,458 + +1.0 227,458 + -0.3 227,459 - -0.5 227,712 - +0.6 227,743 + AZOBR_RS15455 0.11 -0.6 227,743 + AZOBR_RS15455 0.11 -2.0 227,744 - AZOBR_RS15455 0.11 -1.3 228,406 + +0.2 228,500 + AZOBR_RS15460 0.19 -0.5 228,502 + AZOBR_RS15460 0.19 -0.8 228,502 + AZOBR_RS15460 0.19 +0.5 228,502 + AZOBR_RS15460 0.19 -0.4 228,503 - AZOBR_RS15460 0.19 +0.5 228,503 - AZOBR_RS15460 0.19 -0.5 228,503 - AZOBR_RS15460 0.19 -0.3 228,632 - AZOBR_RS15460 0.36 +1.8 228,721 + AZOBR_RS15460 0.47 -0.3 228,793 + AZOBR_RS15460 0.56 +0.7
Or see this region's nucleotide sequence