Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS11150

Experiment: 2-pentyl-furan 1.335528 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS11135 and AZOBR_RS11140 are separated by 225 nucleotidesAZOBR_RS11140 and AZOBR_RS11145 overlap by 4 nucleotidesAZOBR_RS11145 and AZOBR_RS11150 are separated by 3 nucleotidesAZOBR_RS11150 and AZOBR_RS11155 are separated by 133 nucleotides AZOBR_RS11135: AZOBR_RS11135 - flagellar basal-body rod protein FlgB, at 2,343,428 to 2,343,832 _RS11135 AZOBR_RS11140: AZOBR_RS11140 - flagellar protein FhlB, at 2,344,058 to 2,344,384 _RS11140 AZOBR_RS11145: AZOBR_RS11145 - hypothetical protein, at 2,344,381 to 2,344,755 _RS11145 AZOBR_RS11150: AZOBR_RS11150 - hypothetical protein, at 2,344,759 to 2,345,058 _RS11150 AZOBR_RS11155: AZOBR_RS11155 - hypothetical protein, at 2,345,192 to 2,345,878 _RS11155 Position (kb) 2344 2345 2346Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 2343.956 kb on + strandat 2343.957 kb on - strandat 2343.957 kb on - strandat 2344.003 kb on + strandat 2344.023 kb on - strandat 2344.121 kb on + strand, within AZOBR_RS11140at 2344.121 kb on + strand, within AZOBR_RS11140at 2344.121 kb on + strand, within AZOBR_RS11140at 2344.121 kb on + strand, within AZOBR_RS11140at 2344.121 kb on + strand, within AZOBR_RS11140at 2344.122 kb on - strand, within AZOBR_RS11140at 2344.122 kb on - strand, within AZOBR_RS11140at 2344.122 kb on - strand, within AZOBR_RS11140at 2344.320 kb on - strand, within AZOBR_RS11140at 2344.774 kb on + strandat 2344.774 kb on + strandat 2344.774 kb on + strandat 2344.775 kb on - strandat 2344.775 kb on - strandat 2344.775 kb on - strandat 2345.463 kb on - strand, within AZOBR_RS11155at 2345.463 kb on - strand, within AZOBR_RS11155at 2345.787 kb on + strand, within AZOBR_RS11155at 2345.788 kb on - strand, within AZOBR_RS11155at 2345.788 kb on - strand, within AZOBR_RS11155at 2345.834 kb on + strandat 2345.835 kb on - strandat 2345.876 kb on + strandat 2345.877 kb on - strandat 2345.877 kb on - strandat 2345.973 kb on + strandat 2345.973 kb on + strandat 2345.974 kb on - strandat 2345.977 kb on - strandat 2345.996 kb on + strandat 2345.996 kb on + strandat 2345.997 kb on - strandat 2345.997 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-pentyl-furan 1.335528 mM
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2,343,956 + +2.1
2,343,957 - -0.3
2,343,957 - -1.4
2,344,003 + +2.1
2,344,023 - -2.3
2,344,121 + AZOBR_RS11140 0.19 +0.3
2,344,121 + AZOBR_RS11140 0.19 -0.4
2,344,121 + AZOBR_RS11140 0.19 +0.3
2,344,121 + AZOBR_RS11140 0.19 +0.5
2,344,121 + AZOBR_RS11140 0.19 -0.4
2,344,122 - AZOBR_RS11140 0.20 -1.8
2,344,122 - AZOBR_RS11140 0.20 -2.8
2,344,122 - AZOBR_RS11140 0.20 -3.5
2,344,320 - AZOBR_RS11140 0.80 -3.0
2,344,774 + -3.0
2,344,774 + -2.9
2,344,774 + -3.4
2,344,775 - -3.1
2,344,775 - -1.7
2,344,775 - -1.6
2,345,463 - AZOBR_RS11155 0.39 -3.7
2,345,463 - AZOBR_RS11155 0.39 -3.8
2,345,787 + AZOBR_RS11155 0.87 -1.6
2,345,788 - AZOBR_RS11155 0.87 -0.5
2,345,788 - AZOBR_RS11155 0.87 -2.7
2,345,834 + -3.8
2,345,835 - -0.3
2,345,876 + +0.2
2,345,877 - +0.1
2,345,877 - +0.1
2,345,973 + +0.1
2,345,973 + -0.9
2,345,974 - -0.5
2,345,977 - -0.5
2,345,996 + -1.3
2,345,996 + -0.5
2,345,997 - -0.1
2,345,997 - +0.5

Or see this region's nucleotide sequence