Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS09935

Experiment: 2-pentyl-furan 1.335528 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS09930 and AZOBR_RS09935 are separated by 126 nucleotidesAZOBR_RS09935 and AZOBR_RS09940 are separated by 62 nucleotides AZOBR_RS09930: AZOBR_RS09930 - membrane protein, at 2,082,122 to 2,086,438 _RS09930 AZOBR_RS09935: AZOBR_RS09935 - hypothetical protein, at 2,086,565 to 2,087,263 _RS09935 AZOBR_RS09940: AZOBR_RS09940 - 5'-methylthioadenosine phosphorylase, at 2,087,326 to 2,088,210 _RS09940 Position (kb) 2086 2087 2088Strain fitness (log2 ratio) -1 0 1 2 3at 2086.277 kb on + strandat 2086.278 kb on - strandat 2086.295 kb on + strandat 2086.295 kb on + strandat 2086.433 kb on + strandat 2086.453 kb on + strandat 2086.453 kb on + strandat 2086.453 kb on + strandat 2086.454 kb on - strandat 2086.454 kb on - strandat 2086.589 kb on + strandat 2086.673 kb on + strand, within AZOBR_RS09935at 2087.226 kb on - strandat 2087.293 kb on - strandat 2087.326 kb on - strandat 2087.517 kb on + strand, within AZOBR_RS09940at 2087.517 kb on + strand, within AZOBR_RS09940at 2087.554 kb on + strand, within AZOBR_RS09940at 2087.555 kb on - strand, within AZOBR_RS09940at 2087.809 kb on + strand, within AZOBR_RS09940at 2087.809 kb on + strand, within AZOBR_RS09940at 2087.809 kb on + strand, within AZOBR_RS09940at 2087.809 kb on + strand, within AZOBR_RS09940at 2087.809 kb on + strand, within AZOBR_RS09940at 2087.810 kb on - strand, within AZOBR_RS09940at 2087.810 kb on - strand, within AZOBR_RS09940

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-pentyl-furan 1.335528 mM
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2,086,277 + -0.5
2,086,278 - +0.1
2,086,295 + +1.1
2,086,295 + +2.1
2,086,433 + +2.1
2,086,453 + +0.2
2,086,453 + -0.2
2,086,453 + -0.0
2,086,454 - -0.4
2,086,454 - -0.1
2,086,589 + -0.1
2,086,673 + AZOBR_RS09935 0.15 -0.7
2,087,226 - +0.2
2,087,293 - +0.2
2,087,326 - -0.1
2,087,517 + AZOBR_RS09940 0.22 -0.5
2,087,517 + AZOBR_RS09940 0.22 -0.0
2,087,554 + AZOBR_RS09940 0.26 -0.3
2,087,555 - AZOBR_RS09940 0.26 +3.1
2,087,809 + AZOBR_RS09940 0.55 -0.1
2,087,809 + AZOBR_RS09940 0.55 +0.1
2,087,809 + AZOBR_RS09940 0.55 -1.3
2,087,809 + AZOBR_RS09940 0.55 -0.5
2,087,809 + AZOBR_RS09940 0.55 -0.6
2,087,810 - AZOBR_RS09940 0.55 +0.9
2,087,810 - AZOBR_RS09940 0.55 -0.6

Or see this region's nucleotide sequence