Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS09290

Experiment: 2-pentyl-furan 1.335528 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAZOBR_RS09290 and AZOBR_RS09295 are separated by 267 nucleotidesAZOBR_RS09295 and AZOBR_RS09300 are separated by 154 nucleotides AZOBR_RS09290: AZOBR_RS09290 - deoxyribodipyrimidine photo-lyase, at 1,941,083 to 1,942,540 _RS09290 AZOBR_RS09295: AZOBR_RS09295 - conserved hypothetical protein; Beta-Ig-H3/Fasciclin domain, at 1,942,808 to 1,943,296 _RS09295 AZOBR_RS09300: AZOBR_RS09300 - phosphoesterase, at 1,943,451 to 1,944,107 _RS09300 Position (kb) 1941 1942 1943Strain fitness (log2 ratio) -2 -1 0 1 2at 1940.096 kb on - strandat 1940.197 kb on + strandat 1940.198 kb on - strandat 1940.198 kb on - strandat 1940.198 kb on - strandat 1940.198 kb on - strandat 1940.275 kb on + strandat 1940.443 kb on + strandat 1940.443 kb on + strandat 1940.444 kb on - strandat 1940.908 kb on + strandat 1941.279 kb on + strand, within AZOBR_RS09290at 1941.279 kb on + strand, within AZOBR_RS09290at 1941.280 kb on - strand, within AZOBR_RS09290at 1941.280 kb on - strand, within AZOBR_RS09290at 1941.280 kb on - strand, within AZOBR_RS09290at 1941.280 kb on - strand, within AZOBR_RS09290at 1941.280 kb on - strand, within AZOBR_RS09290at 1942.135 kb on - strand, within AZOBR_RS09290at 1942.807 kb on + strandat 1942.807 kb on + strandat 1942.807 kb on + strandat 1942.807 kb on + strandat 1942.808 kb on - strandat 1942.808 kb on - strandat 1942.808 kb on - strandat 1942.808 kb on - strandat 1943.096 kb on + strand, within AZOBR_RS09295at 1943.097 kb on - strand, within AZOBR_RS09295at 1943.097 kb on - strand, within AZOBR_RS09295at 1943.097 kb on - strand, within AZOBR_RS09295at 1943.103 kb on - strand, within AZOBR_RS09295

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 2-pentyl-furan 1.335528 mM
remove
1,940,096 - -0.2
1,940,197 + -0.1
1,940,198 - -2.5
1,940,198 - -1.2
1,940,198 - -0.2
1,940,198 - -0.2
1,940,275 + -0.7
1,940,443 + -0.7
1,940,443 + -0.8
1,940,444 - +0.6
1,940,908 + +0.3
1,941,279 + AZOBR_RS09290 0.13 -1.0
1,941,279 + AZOBR_RS09290 0.13 -1.2
1,941,280 - AZOBR_RS09290 0.14 +0.6
1,941,280 - AZOBR_RS09290 0.14 -0.2
1,941,280 - AZOBR_RS09290 0.14 -1.2
1,941,280 - AZOBR_RS09290 0.14 -2.0
1,941,280 - AZOBR_RS09290 0.14 -1.3
1,942,135 - AZOBR_RS09290 0.72 +0.1
1,942,807 + +0.1
1,942,807 + +2.1
1,942,807 + -0.2
1,942,807 + -0.3
1,942,808 - +0.9
1,942,808 - +1.1
1,942,808 - -0.2
1,942,808 - -0.7
1,943,096 + AZOBR_RS09295 0.59 -0.0
1,943,097 - AZOBR_RS09295 0.59 -1.1
1,943,097 - AZOBR_RS09295 0.59 -0.9
1,943,097 - AZOBR_RS09295 0.59 +0.9
1,943,103 - AZOBR_RS09295 0.60 +0.3

Or see this region's nucleotide sequence