Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS08035

Experiment: 2-pentyl-furan 1.335528 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS08025 and AZOBR_RS08030 are separated by 258 nucleotidesAZOBR_RS08030 and AZOBR_RS08035 are separated by 47 nucleotidesAZOBR_RS08035 and AZOBR_RS08040 are separated by 352 nucleotides AZOBR_RS08025: AZOBR_RS08025 - hypothetical protein, at 1,693,165 to 1,693,800 _RS08025 AZOBR_RS08030: AZOBR_RS08030 - glutamine amidotransferase, at 1,694,059 to 1,694,631 _RS08030 AZOBR_RS08035: AZOBR_RS08035 - regulator, at 1,694,679 to 1,695,341 _RS08035 AZOBR_RS08040: AZOBR_RS08040 - regulator, at 1,695,694 to 1,696,395 _RS08040 Position (kb) 1694 1695 1696Strain fitness (log2 ratio) -3 -2 -1 0 1at 1693.778 kb on + strandat 1693.922 kb on + strandat 1693.922 kb on + strandat 1694.016 kb on - strandat 1694.966 kb on - strand, within AZOBR_RS08035at 1694.966 kb on - strand, within AZOBR_RS08035at 1694.966 kb on - strand, within AZOBR_RS08035at 1695.037 kb on + strand, within AZOBR_RS08035at 1695.432 kb on + strandat 1695.477 kb on + strandat 1695.478 kb on - strandat 1696.048 kb on + strand, within AZOBR_RS08040at 1696.048 kb on + strand, within AZOBR_RS08040at 1696.048 kb on + strand, within AZOBR_RS08040at 1696.049 kb on - strand, within AZOBR_RS08040

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-pentyl-furan 1.335528 mM
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1,693,778 + -0.5
1,693,922 + -0.8
1,693,922 + -0.8
1,694,016 - -0.2
1,694,966 - AZOBR_RS08035 0.43 -0.4
1,694,966 - AZOBR_RS08035 0.43 -0.2
1,694,966 - AZOBR_RS08035 0.43 +0.7
1,695,037 + AZOBR_RS08035 0.54 +0.1
1,695,432 + -0.9
1,695,477 + +0.7
1,695,478 - -0.2
1,696,048 + AZOBR_RS08040 0.50 +0.4
1,696,048 + AZOBR_RS08040 0.50 -3.1
1,696,048 + AZOBR_RS08040 0.50 -1.2
1,696,049 - AZOBR_RS08040 0.51 -1.6

Or see this region's nucleotide sequence