Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS05725

Experiment: 2-pentyl-furan 1.335528 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS05715 and AZOBR_RS05720 are separated by 172 nucleotidesAZOBR_RS05720 and AZOBR_RS05725 are separated by 116 nucleotidesAZOBR_RS05725 and AZOBR_RS05730 are separated by 10 nucleotides AZOBR_RS05715: AZOBR_RS05715 - 50S ribosomal protein L36, at 1,212,013 to 1,212,138 _RS05715 AZOBR_RS05720: AZOBR_RS05720 - methyltransferase type 11, at 1,212,311 to 1,212,835 _RS05720 AZOBR_RS05725: AZOBR_RS05725 - FAD-binding protein, at 1,212,952 to 1,214,439 _RS05725 AZOBR_RS05730: AZOBR_RS05730 - 2-hydroxy-acid oxidase, at 1,214,450 to 1,215,703 _RS05730 Position (kb) 1212 1213 1214 1215Strain fitness (log2 ratio) -2 -1 0 1at 1212.501 kb on - strand, within AZOBR_RS05720at 1212.501 kb on - strand, within AZOBR_RS05720at 1212.501 kb on - strand, within AZOBR_RS05720at 1212.501 kb on - strand, within AZOBR_RS05720at 1212.545 kb on + strand, within AZOBR_RS05720at 1212.564 kb on - strand, within AZOBR_RS05720at 1212.641 kb on + strand, within AZOBR_RS05720at 1212.641 kb on + strand, within AZOBR_RS05720at 1212.743 kb on + strand, within AZOBR_RS05720at 1212.744 kb on - strand, within AZOBR_RS05720at 1212.772 kb on - strand, within AZOBR_RS05720at 1212.772 kb on - strand, within AZOBR_RS05720at 1212.886 kb on + strandat 1212.886 kb on + strandat 1212.887 kb on - strandat 1213.154 kb on + strand, within AZOBR_RS05725at 1213.155 kb on - strand, within AZOBR_RS05725at 1213.155 kb on - strand, within AZOBR_RS05725at 1213.366 kb on + strand, within AZOBR_RS05725at 1213.367 kb on - strand, within AZOBR_RS05725at 1213.367 kb on - strand, within AZOBR_RS05725at 1213.369 kb on + strand, within AZOBR_RS05725at 1213.453 kb on + strand, within AZOBR_RS05725at 1213.550 kb on - strand, within AZOBR_RS05725at 1213.897 kb on + strand, within AZOBR_RS05725at 1213.990 kb on + strand, within AZOBR_RS05725at 1213.990 kb on + strand, within AZOBR_RS05725at 1213.991 kb on - strand, within AZOBR_RS05725at 1213.994 kb on - strand, within AZOBR_RS05725at 1213.994 kb on - strand, within AZOBR_RS05725at 1213.994 kb on - strand, within AZOBR_RS05725at 1213.994 kb on - strand, within AZOBR_RS05725at 1214.131 kb on + strand, within AZOBR_RS05725at 1214.131 kb on - strand, within AZOBR_RS05725at 1214.132 kb on - strand, within AZOBR_RS05725at 1214.132 kb on - strand, within AZOBR_RS05725at 1214.588 kb on + strand, within AZOBR_RS05730at 1214.588 kb on + strand, within AZOBR_RS05730at 1214.627 kb on + strand, within AZOBR_RS05730at 1214.882 kb on + strand, within AZOBR_RS05730at 1214.882 kb on + strand, within AZOBR_RS05730at 1214.883 kb on - strand, within AZOBR_RS05730at 1214.883 kb on - strandat 1214.883 kb on - strand, within AZOBR_RS05730at 1214.883 kb on - strand, within AZOBR_RS05730at 1215.087 kb on - strand, within AZOBR_RS05730at 1215.309 kb on - strand, within AZOBR_RS05730

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-pentyl-furan 1.335528 mM
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1,212,501 - AZOBR_RS05720 0.36 +0.1
1,212,501 - AZOBR_RS05720 0.36 +0.4
1,212,501 - AZOBR_RS05720 0.36 +0.3
1,212,501 - AZOBR_RS05720 0.36 -0.2
1,212,545 + AZOBR_RS05720 0.45 +0.3
1,212,564 - AZOBR_RS05720 0.48 +0.2
1,212,641 + AZOBR_RS05720 0.63 -0.1
1,212,641 + AZOBR_RS05720 0.63 +0.2
1,212,743 + AZOBR_RS05720 0.82 +0.3
1,212,744 - AZOBR_RS05720 0.82 -0.1
1,212,772 - AZOBR_RS05720 0.88 +0.5
1,212,772 - AZOBR_RS05720 0.88 +0.7
1,212,886 + -0.3
1,212,886 + -0.3
1,212,887 - -0.1
1,213,154 + AZOBR_RS05725 0.14 -0.0
1,213,155 - AZOBR_RS05725 0.14 +0.3
1,213,155 - AZOBR_RS05725 0.14 +1.3
1,213,366 + AZOBR_RS05725 0.28 -0.2
1,213,367 - AZOBR_RS05725 0.28 -1.5
1,213,367 - AZOBR_RS05725 0.28 -0.2
1,213,369 + AZOBR_RS05725 0.28 -0.1
1,213,453 + AZOBR_RS05725 0.34 -0.1
1,213,550 - AZOBR_RS05725 0.40 +0.1
1,213,897 + AZOBR_RS05725 0.64 -0.6
1,213,990 + AZOBR_RS05725 0.70 -0.3
1,213,990 + AZOBR_RS05725 0.70 +0.3
1,213,991 - AZOBR_RS05725 0.70 +0.7
1,213,994 - AZOBR_RS05725 0.70 +0.7
1,213,994 - AZOBR_RS05725 0.70 -0.6
1,213,994 - AZOBR_RS05725 0.70 +0.1
1,213,994 - AZOBR_RS05725 0.70 +0.6
1,214,131 + AZOBR_RS05725 0.79 -0.7
1,214,131 - AZOBR_RS05725 0.79 +0.0
1,214,132 - AZOBR_RS05725 0.79 +1.0
1,214,132 - AZOBR_RS05725 0.79 +0.9
1,214,588 + AZOBR_RS05730 0.11 -0.1
1,214,588 + AZOBR_RS05730 0.11 -0.1
1,214,627 + AZOBR_RS05730 0.14 +0.1
1,214,882 + AZOBR_RS05730 0.34 -2.2
1,214,882 + AZOBR_RS05730 0.34 -0.0
1,214,883 - AZOBR_RS05730 0.35 +0.0
1,214,883 - -0.3
1,214,883 - AZOBR_RS05730 0.35 -0.6
1,214,883 - AZOBR_RS05730 0.35 -0.4
1,215,087 - AZOBR_RS05730 0.51 +1.0
1,215,309 - AZOBR_RS05730 0.69 -1.0

Or see this region's nucleotide sequence