Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS00090

Experiment: 2-pentyl-furan 1.335528 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS00085 and AZOBR_RS00090 are separated by 161 nucleotidesAZOBR_RS00090 and AZOBR_RS00095 are separated by 141 nucleotides AZOBR_RS00085: AZOBR_RS00085 - histidine kinase, at 6,115 to 7,206 _RS00085 AZOBR_RS00090: AZOBR_RS00090 - hypothetical protein, at 7,368 to 8,156 _RS00090 AZOBR_RS00095: AZOBR_RS00095 - MFS transporter permease, at 8,298 to 9,482 _RS00095 Position (kb) 7 8 9Strain fitness (log2 ratio) -2 -1 0 1 2at 7.233 kb on + strandat 7.235 kb on + strandat 7.310 kb on - strandat 7.310 kb on - strandat 7.392 kb on + strandat 7.394 kb on + strandat 7.395 kb on - strandat 7.395 kb on - strandat 7.395 kb on - strandat 7.395 kb on - strandat 7.403 kb on + strandat 7.404 kb on - strandat 7.404 kb on - strandat 7.710 kb on + strand, within AZOBR_RS00090at 7.710 kb on + strand, within AZOBR_RS00090at 7.710 kb on + strand, within AZOBR_RS00090at 8.013 kb on + strand, within AZOBR_RS00090at 8.013 kb on + strand, within AZOBR_RS00090at 8.013 kb on + strand, within AZOBR_RS00090at 8.014 kb on - strand, within AZOBR_RS00090at 8.014 kb on - strand, within AZOBR_RS00090at 8.258 kb on - strandat 8.377 kb on - strandat 8.377 kb on - strandat 8.485 kb on - strand, within AZOBR_RS00095at 8.544 kb on + strand, within AZOBR_RS00095at 8.544 kb on + strand, within AZOBR_RS00095at 8.544 kb on + strand, within AZOBR_RS00095at 8.703 kb on + strand, within AZOBR_RS00095at 8.703 kb on + strand, within AZOBR_RS00095at 8.704 kb on - strand, within AZOBR_RS00095at 8.907 kb on + strand, within AZOBR_RS00095

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-pentyl-furan 1.335528 mM
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7,233 + +1.4
7,235 + -0.7
7,310 - +0.1
7,310 - +1.1
7,392 + -0.2
7,394 + -0.8
7,395 - -0.8
7,395 - -0.3
7,395 - -1.3
7,395 - +1.5
7,403 + -0.0
7,404 - +1.3
7,404 - +0.2
7,710 + AZOBR_RS00090 0.43 -1.3
7,710 + AZOBR_RS00090 0.43 +0.1
7,710 + AZOBR_RS00090 0.43 -2.3
8,013 + AZOBR_RS00090 0.82 +0.5
8,013 + AZOBR_RS00090 0.82 +0.4
8,013 + AZOBR_RS00090 0.82 -0.4
8,014 - AZOBR_RS00090 0.82 -0.5
8,014 - AZOBR_RS00090 0.82 -1.1
8,258 - -2.5
8,377 - -1.5
8,377 - -0.6
8,485 - AZOBR_RS00095 0.16 -0.0
8,544 + AZOBR_RS00095 0.21 -1.3
8,544 + AZOBR_RS00095 0.21 -0.1
8,544 + AZOBR_RS00095 0.21 -0.1
8,703 + AZOBR_RS00095 0.34 +0.5
8,703 + AZOBR_RS00095 0.34 +2.0
8,704 - AZOBR_RS00095 0.34 -0.4
8,907 + AZOBR_RS00095 0.51 -1.5

Or see this region's nucleotide sequence