Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS31385

Experiment: 2-pentyl-furan 1.335528 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS31385 and AZOBR_RS31390 are separated by 47 nucleotidesAZOBR_RS31390 and AZOBR_RS31395 are separated by 48 nucleotides AZOBR_RS31385: AZOBR_RS31385 - GntR family transcriptional regulator, at 410,462 to 411,118 _RS31385 AZOBR_RS31390: AZOBR_RS31390 - 3-ketoacyl-ACP reductase, at 411,166 to 411,924 _RS31390 AZOBR_RS31395: AZOBR_RS31395 - cupin, at 411,973 to 412,308 _RS31395 Position (kb) 410 411 412Strain fitness (log2 ratio) -2 -1 0 1 2at 409.508 kb on + strandat 409.509 kb on - strandat 409.509 kb on - strandat 409.509 kb on - strandat 409.514 kb on - strandat 409.688 kb on + strandat 409.689 kb on - strandat 409.689 kb on - strandat 409.729 kb on + strandat 409.774 kb on + strandat 410.028 kb on + strandat 410.059 kb on + strandat 410.059 kb on + strandat 410.093 kb on + strandat 410.139 kb on + strandat 410.174 kb on - strandat 410.490 kb on - strandat 410.490 kb on - strandat 411.634 kb on + strand, within AZOBR_RS31390at 411.730 kb on + strand, within AZOBR_RS31390at 411.958 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-pentyl-furan 1.335528 mM
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409,508 + +0.8
409,509 - +1.8
409,509 - +0.8
409,509 - +1.8
409,514 - +0.5
409,688 + +1.8
409,689 - +0.8
409,689 - +1.5
409,729 + -1.7
409,774 + -1.1
410,028 + +1.8
410,059 + +0.3
410,059 + +0.8
410,093 + -0.2
410,139 + +2.1
410,174 - +1.8
410,490 - -0.9
410,490 - -0.9
411,634 + AZOBR_RS31390 0.62 -0.8
411,730 + AZOBR_RS31390 0.74 -1.2
411,958 - -2.1

Or see this region's nucleotide sequence