Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS30510

Experiment: 2-pentyl-furan 1.335528 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS30505 and AZOBR_RS30510 are separated by 379 nucleotidesAZOBR_RS30510 and AZOBR_RS30515 are separated by 387 nucleotides AZOBR_RS30505: AZOBR_RS30505 - transcriptional regulator, at 190,870 to 191,565 _RS30505 AZOBR_RS30510: AZOBR_RS30510 - heme iron utilization protein, at 191,945 to 192,664 _RS30510 AZOBR_RS30515: AZOBR_RS30515 - phosphoenolpyruvate carboxykinase, at 193,052 to 194,875 _RS30515 Position (kb) 191 192 193Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 190.991 kb on + strand, within AZOBR_RS30505at 191.006 kb on + strand, within AZOBR_RS30505at 191.270 kb on + strand, within AZOBR_RS30505at 191.270 kb on + strand, within AZOBR_RS30505at 191.271 kb on - strand, within AZOBR_RS30505at 191.271 kb on - strand, within AZOBR_RS30505at 191.271 kb on - strand, within AZOBR_RS30505at 191.271 kb on - strand, within AZOBR_RS30505at 191.472 kb on - strand, within AZOBR_RS30505at 191.472 kb on - strand, within AZOBR_RS30505at 191.551 kb on + strandat 191.552 kb on - strandat 191.716 kb on + strandat 191.783 kb on + strandat 191.799 kb on + strandat 192.287 kb on + strand, within AZOBR_RS30510at 192.479 kb on + strand, within AZOBR_RS30510at 192.479 kb on + strand, within AZOBR_RS30510at 192.479 kb on + strand, within AZOBR_RS30510at 192.961 kb on + strandat 192.962 kb on - strandat 193.238 kb on + strand, within AZOBR_RS30515at 193.238 kb on + strand, within AZOBR_RS30515at 193.239 kb on - strand, within AZOBR_RS30515at 193.289 kb on + strand, within AZOBR_RS30515at 193.289 kb on + strand, within AZOBR_RS30515at 193.289 kb on + strand, within AZOBR_RS30515at 193.289 kb on + strand, within AZOBR_RS30515at 193.289 kb on + strand, within AZOBR_RS30515at 193.290 kb on - strand, within AZOBR_RS30515at 193.290 kb on - strand, within AZOBR_RS30515at 193.290 kb on - strandat 193.290 kb on - strand, within AZOBR_RS30515at 193.290 kb on - strand, within AZOBR_RS30515at 193.290 kb on - strand, within AZOBR_RS30515at 193.290 kb on - strand, within AZOBR_RS30515at 193.290 kb on - strand, within AZOBR_RS30515at 193.406 kb on + strand, within AZOBR_RS30515at 193.406 kb on + strand, within AZOBR_RS30515at 193.406 kb on + strand, within AZOBR_RS30515at 193.406 kb on + strand, within AZOBR_RS30515at 193.406 kb on + strand, within AZOBR_RS30515at 193.406 kb on + strand, within AZOBR_RS30515at 193.406 kb on + strand, within AZOBR_RS30515at 193.406 kb on + strand, within AZOBR_RS30515at 193.406 kb on + strand, within AZOBR_RS30515at 193.406 kb on + strand, within AZOBR_RS30515at 193.406 kb on + strand, within AZOBR_RS30515at 193.406 kb on + strand, within AZOBR_RS30515at 193.406 kb on + strand, within AZOBR_RS30515at 193.406 kb on + strand, within AZOBR_RS30515at 193.406 kb on + strand, within AZOBR_RS30515at 193.407 kb on - strand, within AZOBR_RS30515at 193.407 kb on - strand, within AZOBR_RS30515at 193.407 kb on - strand, within AZOBR_RS30515at 193.407 kb on - strand, within AZOBR_RS30515at 193.407 kb on - strand, within AZOBR_RS30515at 193.407 kb on - strand, within AZOBR_RS30515at 193.407 kb on - strand, within AZOBR_RS30515at 193.407 kb on - strand, within AZOBR_RS30515at 193.407 kb on - strand, within AZOBR_RS30515at 193.407 kb on - strand, within AZOBR_RS30515at 193.407 kb on - strand, within AZOBR_RS30515at 193.407 kb on - strand, within AZOBR_RS30515at 193.482 kb on - strand, within AZOBR_RS30515at 193.482 kb on - strand, within AZOBR_RS30515at 193.637 kb on + strand, within AZOBR_RS30515at 193.637 kb on + strand, within AZOBR_RS30515at 193.637 kb on + strand, within AZOBR_RS30515at 193.637 kb on + strand, within AZOBR_RS30515at 193.637 kb on + strand, within AZOBR_RS30515at 193.638 kb on - strand, within AZOBR_RS30515at 193.638 kb on - strand, within AZOBR_RS30515at 193.638 kb on - strand, within AZOBR_RS30515at 193.638 kb on - strand, within AZOBR_RS30515at 193.638 kb on - strand, within AZOBR_RS30515at 193.638 kb on - strand, within AZOBR_RS30515

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-pentyl-furan 1.335528 mM
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190,991 + AZOBR_RS30505 0.17 +0.8
191,006 + AZOBR_RS30505 0.20 +0.8
191,270 + AZOBR_RS30505 0.57 +1.8
191,270 + AZOBR_RS30505 0.57 -1.1
191,271 - AZOBR_RS30505 0.58 -0.7
191,271 - AZOBR_RS30505 0.58 +0.8
191,271 - AZOBR_RS30505 0.58 +0.3
191,271 - AZOBR_RS30505 0.58 +0.3
191,472 - AZOBR_RS30505 0.86 +0.8
191,472 - AZOBR_RS30505 0.86 -0.2
191,551 + +0.3
191,552 - -0.5
191,716 + -0.5
191,783 + +0.8
191,799 + -1.0
192,287 + AZOBR_RS30510 0.47 -0.3
192,479 + AZOBR_RS30510 0.74 +0.2
192,479 + AZOBR_RS30510 0.74 -0.8
192,479 + AZOBR_RS30510 0.74 +0.6
192,961 + +0.3
192,962 - +0.8
193,238 + AZOBR_RS30515 0.10 +1.8
193,238 + AZOBR_RS30515 0.10 -0.5
193,239 - AZOBR_RS30515 0.10 +0.5
193,289 + AZOBR_RS30515 0.13 +0.9
193,289 + AZOBR_RS30515 0.13 +0.8
193,289 + AZOBR_RS30515 0.13 +0.4
193,289 + AZOBR_RS30515 0.13 -2.9
193,289 + AZOBR_RS30515 0.13 -0.0
193,290 - AZOBR_RS30515 0.13 +0.1
193,290 - AZOBR_RS30515 0.13 -1.2
193,290 - -0.2
193,290 - AZOBR_RS30515 0.13 +0.3
193,290 - AZOBR_RS30515 0.13 +0.6
193,290 - AZOBR_RS30515 0.13 +0.5
193,290 - AZOBR_RS30515 0.13 +0.1
193,290 - AZOBR_RS30515 0.13 -0.3
193,406 + AZOBR_RS30515 0.19 +0.7
193,406 + AZOBR_RS30515 0.19 -1.2
193,406 + AZOBR_RS30515 0.19 +0.1
193,406 + AZOBR_RS30515 0.19 -1.2
193,406 + AZOBR_RS30515 0.19 +0.3
193,406 + AZOBR_RS30515 0.19 +0.3
193,406 + AZOBR_RS30515 0.19 +2.1
193,406 + AZOBR_RS30515 0.19 -0.6
193,406 + AZOBR_RS30515 0.19 -0.4
193,406 + AZOBR_RS30515 0.19 +0.9
193,406 + AZOBR_RS30515 0.19 -0.2
193,406 + AZOBR_RS30515 0.19 -0.2
193,406 + AZOBR_RS30515 0.19 +1.4
193,406 + AZOBR_RS30515 0.19 +0.5
193,406 + AZOBR_RS30515 0.19 -1.7
193,407 - AZOBR_RS30515 0.19 +0.3
193,407 - AZOBR_RS30515 0.19 -0.7
193,407 - AZOBR_RS30515 0.19 +1.5
193,407 - AZOBR_RS30515 0.19 +0.4
193,407 - AZOBR_RS30515 0.19 +0.3
193,407 - AZOBR_RS30515 0.19 +1.2
193,407 - AZOBR_RS30515 0.19 -0.6
193,407 - AZOBR_RS30515 0.19 -0.2
193,407 - AZOBR_RS30515 0.19 -0.5
193,407 - AZOBR_RS30515 0.19 +0.8
193,407 - AZOBR_RS30515 0.19 +2.2
193,407 - AZOBR_RS30515 0.19 -0.2
193,482 - AZOBR_RS30515 0.24 -0.7
193,482 - AZOBR_RS30515 0.24 -1.3
193,637 + AZOBR_RS30515 0.32 -1.5
193,637 + AZOBR_RS30515 0.32 -0.7
193,637 + AZOBR_RS30515 0.32 -0.6
193,637 + AZOBR_RS30515 0.32 -0.1
193,637 + AZOBR_RS30515 0.32 +0.4
193,638 - AZOBR_RS30515 0.32 +0.4
193,638 - AZOBR_RS30515 0.32 +1.8
193,638 - AZOBR_RS30515 0.32 +0.3
193,638 - AZOBR_RS30515 0.32 +0.8
193,638 - AZOBR_RS30515 0.32 +0.7
193,638 - AZOBR_RS30515 0.32 +1.8

Or see this region's nucleotide sequence