Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS28930

Experiment: 2-pentyl-furan 1.335528 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS28915 and AZOBR_RS28920 overlap by 4 nucleotidesAZOBR_RS28920 and AZOBR_RS28925 overlap by 4 nucleotidesAZOBR_RS28925 and AZOBR_RS28930 are separated by 92 nucleotidesAZOBR_RS28930 and AZOBR_RS28935 overlap by 63 nucleotidesAZOBR_RS28935 and AZOBR_RS28940 are separated by 146 nucleotides AZOBR_RS28915: AZOBR_RS28915 - hypothetical protein, at 636,881 to 637,381 _RS28915 AZOBR_RS28920: AZOBR_RS28920 - transcriptional regulator XRE family (fragment), at 637,378 to 637,629 _RS28920 AZOBR_RS28925: AZOBR_RS28925 - hypothetical protein, at 637,626 to 637,874 _RS28925 AZOBR_RS28930: AZOBR_RS28930 - hypothetical protein, at 637,967 to 638,158 _RS28930 AZOBR_RS28935: AZOBR_RS28935 - hypothetical protein, at 638,096 to 638,305 _RS28935 AZOBR_RS28940: AZOBR_RS28940 - DNA polymerase III subunit beta, at 638,452 to 639,681 _RS28940 Position (kb) 637 638 639Strain fitness (log2 ratio) -2 -1 0 1 2at 637.103 kb on + strand, within AZOBR_RS28915at 637.311 kb on + strand, within AZOBR_RS28915at 637.312 kb on - strand, within AZOBR_RS28915at 637.654 kb on + strand, within AZOBR_RS28925at 637.855 kb on - strandat 638.196 kb on + strand, within AZOBR_RS28935at 638.612 kb on + strand, within AZOBR_RS28940at 638.613 kb on - strand, within AZOBR_RS28940at 638.613 kb on - strand, within AZOBR_RS28940at 638.847 kb on - strand, within AZOBR_RS28940at 638.847 kb on - strand, within AZOBR_RS28940at 638.856 kb on - strand, within AZOBR_RS28940

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-pentyl-furan 1.335528 mM
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637,103 + AZOBR_RS28915 0.44 +0.1
637,311 + AZOBR_RS28915 0.86 -0.2
637,312 - AZOBR_RS28915 0.86 +0.8
637,654 + AZOBR_RS28925 0.11 +1.8
637,855 - -0.2
638,196 + AZOBR_RS28935 0.48 -1.5
638,612 + AZOBR_RS28940 0.13 -1.0
638,613 - AZOBR_RS28940 0.13 -0.2
638,613 - AZOBR_RS28940 0.13 -1.8
638,847 - AZOBR_RS28940 0.32 -2.1
638,847 - AZOBR_RS28940 0.32 +0.4
638,856 - AZOBR_RS28940 0.33 +1.0

Or see this region's nucleotide sequence