Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS26450

Experiment: 2-pentyl-furan 1.335528 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS26440 and AZOBR_RS26450 are separated by 868 nucleotidesAZOBR_RS26450 and AZOBR_RS26455 are separated by 225 nucleotides AZOBR_RS26440: AZOBR_RS26440 - transketolase, at 77,670 to 78,680 _RS26440 AZOBR_RS26450: AZOBR_RS26450 - short-chain dehydrogenase, at 79,549 to 80,298 _RS26450 AZOBR_RS26455: AZOBR_RS26455 - LysR family transcriptional regulator, at 80,524 to 81,462 _RS26455 Position (kb) 79 80 81Strain fitness (log2 ratio) -2 -1 0 1 2 3at 79.015 kb on - strandat 79.083 kb on + strandat 79.084 kb on - strandat 79.188 kb on + strandat 79.188 kb on + strandat 79.189 kb on - strandat 79.189 kb on - strandat 79.285 kb on - strandat 79.300 kb on + strandat 79.301 kb on - strandat 79.301 kb on - strandat 79.423 kb on + strandat 79.598 kb on + strandat 79.598 kb on + strandat 79.599 kb on - strandat 79.599 kb on - strandat 79.946 kb on + strand, within AZOBR_RS26450at 79.946 kb on + strand, within AZOBR_RS26450at 79.946 kb on + strand, within AZOBR_RS26450at 79.946 kb on + strand, within AZOBR_RS26450at 79.946 kb on + strand, within AZOBR_RS26450at 79.946 kb on + strand, within AZOBR_RS26450at 79.947 kb on - strand, within AZOBR_RS26450at 79.985 kb on + strand, within AZOBR_RS26450at 79.985 kb on + strand, within AZOBR_RS26450at 79.986 kb on - strand, within AZOBR_RS26450at 79.986 kb on - strand, within AZOBR_RS26450at 79.986 kb on - strand, within AZOBR_RS26450at 80.482 kb on + strandat 80.963 kb on - strand, within AZOBR_RS26455at 80.963 kb on - strand, within AZOBR_RS26455at 80.963 kb on - strand, within AZOBR_RS26455

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-pentyl-furan 1.335528 mM
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79,015 - +0.6
79,083 + +1.1
79,084 - -1.8
79,188 + +1.0
79,188 + +0.5
79,189 - -0.1
79,189 - +1.2
79,285 - -0.1
79,300 + -1.7
79,301 - +0.3
79,301 - -0.9
79,423 + -0.4
79,598 + -1.1
79,598 + +1.2
79,599 - -0.7
79,599 - +0.7
79,946 + AZOBR_RS26450 0.53 +0.3
79,946 + AZOBR_RS26450 0.53 +0.7
79,946 + AZOBR_RS26450 0.53 -0.4
79,946 + AZOBR_RS26450 0.53 -0.7
79,946 + AZOBR_RS26450 0.53 +0.7
79,946 + AZOBR_RS26450 0.53 -1.3
79,947 - AZOBR_RS26450 0.53 +0.7
79,985 + AZOBR_RS26450 0.58 -1.0
79,985 + AZOBR_RS26450 0.58 -0.7
79,986 - AZOBR_RS26450 0.58 -0.4
79,986 - AZOBR_RS26450 0.58 -0.7
79,986 - AZOBR_RS26450 0.58 -0.2
80,482 + +0.3
80,963 - AZOBR_RS26455 0.47 +1.9
80,963 - AZOBR_RS26455 0.47 +1.9
80,963 - AZOBR_RS26455 0.47 +3.7

Or see this region's nucleotide sequence