Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS22235

Experiment: 2-pentyl-furan 1.335528 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS22230 and AZOBR_RS22235 are separated by 122 nucleotidesAZOBR_RS22235 and AZOBR_RS22240 are separated by 242 nucleotidesAZOBR_RS22240 and AZOBR_RS22245 are separated by 260 nucleotides AZOBR_RS22230: AZOBR_RS22230 - DNA topoisomerase IV subunit B, at 1,759,810 to 1,761,798 _RS22230 AZOBR_RS22235: AZOBR_RS22235 - acyl-CoA thioester hydrolase, at 1,761,921 to 1,762,337 _RS22235 AZOBR_RS22240: AZOBR_RS22240 - septation ring formation regulator EzrA, at 1,762,580 to 1,762,825 _RS22240 AZOBR_RS22245: AZOBR_RS22245 - pyruvate dehydrogenase E1 subunit alpha, at 1,763,086 to 1,764,102 _RS22245 Position (kb) 1761 1762 1763Strain fitness (log2 ratio) -1 0 1 2 3at 1761.809 kb on - strandat 1761.852 kb on + strandat 1761.852 kb on + strandat 1761.854 kb on + strandat 1761.854 kb on + strandat 1761.854 kb on + strandat 1761.855 kb on - strandat 1761.855 kb on - strandat 1761.855 kb on - strandat 1761.855 kb on - strandat 1761.856 kb on + strandat 1761.857 kb on - strandat 1762.149 kb on + strand, within AZOBR_RS22235at 1762.149 kb on + strand, within AZOBR_RS22235at 1762.287 kb on + strand, within AZOBR_RS22235at 1762.403 kb on + strandat 1762.407 kb on - strandat 1763.007 kb on + strandat 1763.018 kb on + strandat 1763.018 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-pentyl-furan 1.335528 mM
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1,761,809 - -1.0
1,761,852 + -0.8
1,761,852 + +1.5
1,761,854 + -1.5
1,761,854 + +3.1
1,761,854 + +1.3
1,761,855 - +0.3
1,761,855 - +1.2
1,761,855 - +0.1
1,761,855 - -1.3
1,761,856 + +0.1
1,761,857 - +1.1
1,762,149 + AZOBR_RS22235 0.55 +0.2
1,762,149 + AZOBR_RS22235 0.55 -1.3
1,762,287 + AZOBR_RS22235 0.88 +0.8
1,762,403 + -0.5
1,762,407 - -0.3
1,763,007 + +1.2
1,763,018 + +1.8
1,763,018 + +1.8

Or see this region's nucleotide sequence