Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS21945

Experiment: 2-pentyl-furan 1.335528 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS21935 and AZOBR_RS21940 are separated by 73 nucleotidesAZOBR_RS21940 and AZOBR_RS21945 are separated by 261 nucleotidesAZOBR_RS21945 and AZOBR_RS21950 are separated by 336 nucleotidesAZOBR_RS21950 and AZOBR_RS21955 are separated by 1 nucleotidesAZOBR_RS21955 and AZOBR_RS21960 are separated by 16 nucleotides AZOBR_RS21935: AZOBR_RS21935 - hypothetical protein, at 1,694,181 to 1,694,552 _RS21935 AZOBR_RS21940: AZOBR_RS21940 - hypothetical protein, at 1,694,626 to 1,694,931 _RS21940 AZOBR_RS21945: AZOBR_RS21945 - FAD-dependent pyridine nucleotide-disulfide oxidoreductase, at 1,695,193 to 1,696,122 _RS21945 AZOBR_RS21950: AZOBR_RS21950 - hypothetical protein, at 1,696,459 to 1,696,650 _RS21950 AZOBR_RS21955: AZOBR_RS21955 - hypothetical protein, at 1,696,652 to 1,697,005 _RS21955 AZOBR_RS21960: AZOBR_RS21960 - molecular chaperone DnaJ, at 1,697,022 to 1,697,930 _RS21960 Position (kb) 1695 1696 1697Strain fitness (log2 ratio) -2 -1 0 1 2at 1694.606 kb on + strandat 1694.607 kb on - strandat 1694.609 kb on - strandat 1694.885 kb on + strand, within AZOBR_RS21940at 1694.885 kb on + strand, within AZOBR_RS21940at 1694.886 kb on - strand, within AZOBR_RS21940at 1694.961 kb on - strandat 1695.042 kb on - strandat 1695.042 kb on - strandat 1695.421 kb on + strand, within AZOBR_RS21945at 1695.574 kb on + strand, within AZOBR_RS21945at 1695.575 kb on - strand, within AZOBR_RS21945at 1695.575 kb on - strand, within AZOBR_RS21945at 1695.889 kb on + strand, within AZOBR_RS21945at 1696.182 kb on + strandat 1696.216 kb on + strandat 1696.217 kb on - strandat 1696.217 kb on - strandat 1696.252 kb on + strandat 1696.287 kb on + strandat 1696.287 kb on + strandat 1696.288 kb on - strandat 1696.312 kb on + strandat 1696.654 kb on - strandat 1696.654 kb on - strandat 1696.764 kb on + strand, within AZOBR_RS21955

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-pentyl-furan 1.335528 mM
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1,694,606 + -0.4
1,694,607 - -2.3
1,694,609 - -0.4
1,694,885 + AZOBR_RS21940 0.85 -0.5
1,694,885 + AZOBR_RS21940 0.85 +0.5
1,694,886 - AZOBR_RS21940 0.85 -0.4
1,694,961 - -0.5
1,695,042 - +0.8
1,695,042 - -0.0
1,695,421 + AZOBR_RS21945 0.25 -1.7
1,695,574 + AZOBR_RS21945 0.41 +0.2
1,695,575 - AZOBR_RS21945 0.41 -1.6
1,695,575 - AZOBR_RS21945 0.41 +0.3
1,695,889 + AZOBR_RS21945 0.75 +0.8
1,696,182 + +0.2
1,696,216 + -1.0
1,696,217 - -0.6
1,696,217 - +1.4
1,696,252 + +0.1
1,696,287 + +0.2
1,696,287 + +1.8
1,696,288 - +1.8
1,696,312 + +1.1
1,696,654 - -0.6
1,696,654 - -0.5
1,696,764 + AZOBR_RS21955 0.32 +0.8

Or see this region's nucleotide sequence