Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS18885

Experiment: 2-pentyl-furan 1.335528 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAZOBR_RS18875 and AZOBR_RS18880 are separated by 34 nucleotidesAZOBR_RS18880 and AZOBR_RS18885 are separated by 161 nucleotidesAZOBR_RS18885 and AZOBR_RS18890 are separated by 156 nucleotides AZOBR_RS18875: AZOBR_RS18875 - ribose ABC transporter permease, at 1,005,650 to 1,006,246 _RS18875 AZOBR_RS18880: AZOBR_RS18880 - nitrogen regulatory protein, at 1,006,281 to 1,006,739 _RS18880 AZOBR_RS18885: AZOBR_RS18885 - 3-demethylubiquinone-9 3-methyltransferase, at 1,006,901 to 1,007,662 _RS18885 AZOBR_RS18890: AZOBR_RS18890 - aspartate kinase, at 1,007,819 to 1,009,054 _RS18890 Position (kb) 1006 1007 1008Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1006.147 kb on + strandat 1006.148 kb on - strandat 1006.148 kb on - strand, within AZOBR_RS18875at 1006.860 kb on + strandat 1006.861 kb on - strandat 1006.861 kb on - strandat 1006.861 kb on - strandat 1006.868 kb on + strandat 1006.868 kb on + strandat 1006.868 kb on + strandat 1006.869 kb on - strandat 1006.869 kb on - strandat 1006.869 kb on - strandat 1006.869 kb on - strandat 1006.896 kb on + strandat 1006.896 kb on + strandat 1006.897 kb on - strandat 1007.677 kb on - strandat 1007.677 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 2-pentyl-furan 1.335528 mM
remove
1,006,147 + +2.8
1,006,148 - +1.8
1,006,148 - AZOBR_RS18875 0.83 -2.0
1,006,860 + -0.3
1,006,861 - -0.4
1,006,861 - -0.8
1,006,861 - +0.1
1,006,868 + -1.5
1,006,868 + +0.2
1,006,868 + -1.4
1,006,869 - -1.2
1,006,869 - -1.4
1,006,869 - +0.3
1,006,869 - -0.2
1,006,896 + +0.3
1,006,896 + -0.5
1,006,897 - +0.4
1,007,677 - -2.0
1,007,677 - -0.5

Or see this region's nucleotide sequence