Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS14090

Experiment: 2-pentyl-furan 1.335528 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAZOBR_RS14090 and AZOBR_RS14095 are separated by 86 nucleotides AZOBR_RS14090: AZOBR_RS14090 - putative Diguanylate cyclase yddV, at 2,964,649 to 2,966,028 _RS14090 AZOBR_RS14095: AZOBR_RS14095 - ATPase, at 2,966,115 to 2,967,269 _RS14095 Position (kb) 2964 2965 2966 2967Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 2963.809 kb on + strandat 2963.809 kb on + strandat 2963.809 kb on + strandat 2963.809 kb on + strandat 2963.809 kb on + strandat 2963.810 kb on - strandat 2963.810 kb on - strandat 2963.810 kb on - strandat 2963.810 kb on - strandat 2963.896 kb on + strandat 2964.473 kb on + strandat 2964.473 kb on + strandat 2964.474 kb on - strandat 2964.474 kb on - strandat 2964.519 kb on + strandat 2964.537 kb on - strandat 2964.788 kb on - strand, within AZOBR_RS14090at 2965.099 kb on - strand, within AZOBR_RS14090at 2965.127 kb on - strand, within AZOBR_RS14090at 2965.265 kb on - strand, within AZOBR_RS14090at 2965.265 kb on - strand, within AZOBR_RS14090at 2965.265 kb on - strand, within AZOBR_RS14090at 2965.265 kb on - strand, within AZOBR_RS14090at 2965.492 kb on + strand, within AZOBR_RS14090at 2965.492 kb on + strand, within AZOBR_RS14090at 2965.492 kb on + strand, within AZOBR_RS14090at 2965.493 kb on - strand, within AZOBR_RS14090at 2965.493 kb on - strand, within AZOBR_RS14090at 2966.082 kb on + strandat 2966.082 kb on + strandat 2966.082 kb on + strandat 2966.082 kb on + strandat 2966.083 kb on - strandat 2966.140 kb on - strandat 2966.217 kb on + strandat 2966.236 kb on - strand, within AZOBR_RS14095at 2966.343 kb on + strand, within AZOBR_RS14095at 2966.343 kb on + strand, within AZOBR_RS14095at 2966.349 kb on + strand, within AZOBR_RS14095at 2966.349 kb on + strand, within AZOBR_RS14095at 2966.349 kb on + strand, within AZOBR_RS14095at 2966.350 kb on - strand, within AZOBR_RS14095at 2966.350 kb on - strand, within AZOBR_RS14095at 2966.350 kb on - strand, within AZOBR_RS14095at 2966.688 kb on + strand, within AZOBR_RS14095at 2966.688 kb on + strand, within AZOBR_RS14095at 2966.688 kb on + strand, within AZOBR_RS14095at 2966.689 kb on - strand, within AZOBR_RS14095at 2966.689 kb on - strand, within AZOBR_RS14095at 2966.814 kb on + strand, within AZOBR_RS14095at 2966.815 kb on - strand, within AZOBR_RS14095at 2967.006 kb on + strand, within AZOBR_RS14095at 2967.007 kb on - strand, within AZOBR_RS14095

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 2-pentyl-furan 1.335528 mM
remove
2,963,809 + -0.4
2,963,809 + -1.2
2,963,809 + +0.4
2,963,809 + +0.1
2,963,809 + -4.0
2,963,810 - -0.1
2,963,810 - -1.9
2,963,810 - +0.2
2,963,810 - -0.2
2,963,896 + -0.1
2,964,473 + +1.2
2,964,473 + -0.2
2,964,474 - -0.9
2,964,474 - +0.0
2,964,519 + -0.5
2,964,537 - +0.4
2,964,788 - AZOBR_RS14090 0.10 -2.2
2,965,099 - AZOBR_RS14090 0.33 -0.6
2,965,127 - AZOBR_RS14090 0.35 +0.2
2,965,265 - AZOBR_RS14090 0.45 +1.1
2,965,265 - AZOBR_RS14090 0.45 -0.0
2,965,265 - AZOBR_RS14090 0.45 +1.1
2,965,265 - AZOBR_RS14090 0.45 +0.1
2,965,492 + AZOBR_RS14090 0.61 +0.3
2,965,492 + AZOBR_RS14090 0.61 +0.3
2,965,492 + AZOBR_RS14090 0.61 +0.7
2,965,493 - AZOBR_RS14090 0.61 -1.0
2,965,493 - AZOBR_RS14090 0.61 -0.6
2,966,082 + -0.5
2,966,082 + -0.2
2,966,082 + -0.3
2,966,082 + +0.2
2,966,083 - -0.1
2,966,140 - +1.8
2,966,217 + -0.6
2,966,236 - AZOBR_RS14095 0.10 -0.3
2,966,343 + AZOBR_RS14095 0.20 -0.7
2,966,343 + AZOBR_RS14095 0.20 -3.5
2,966,349 + AZOBR_RS14095 0.20 +0.3
2,966,349 + AZOBR_RS14095 0.20 -0.2
2,966,349 + AZOBR_RS14095 0.20 -2.5
2,966,350 - AZOBR_RS14095 0.20 +0.2
2,966,350 - AZOBR_RS14095 0.20 -1.6
2,966,350 - AZOBR_RS14095 0.20 -1.1
2,966,688 + AZOBR_RS14095 0.50 -0.4
2,966,688 + AZOBR_RS14095 0.50 -0.3
2,966,688 + AZOBR_RS14095 0.50 +0.2
2,966,689 - AZOBR_RS14095 0.50 -1.0
2,966,689 - AZOBR_RS14095 0.50 +0.6
2,966,814 + AZOBR_RS14095 0.61 -0.6
2,966,815 - AZOBR_RS14095 0.61 -2.1
2,967,006 + AZOBR_RS14095 0.77 -1.6
2,967,007 - AZOBR_RS14095 0.77 -0.7

Or see this region's nucleotide sequence