Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS14075

Experiment: 2-pentyl-furan 1.335528 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS14070 and AZOBR_RS14075 are separated by 148 nucleotidesAZOBR_RS14075 and AZOBR_RS14080 are separated by 42 nucleotides AZOBR_RS14070: AZOBR_RS14070 - succinyl-CoA synthetase subsunit alpha, at 2,956,742 to 2,957,617 _RS14070 AZOBR_RS14075: AZOBR_RS14075 - MFS transporter, at 2,957,766 to 2,960,690 _RS14075 AZOBR_RS14080: AZOBR_RS14080 - dihydrolipoamide succinyltransferase, at 2,960,733 to 2,961,986 _RS14080 Position (kb) 2957 2958 2959 2960 2961Strain fitness (log2 ratio) -2 -1 0 1 2at 2956.955 kb on + strand, within AZOBR_RS14070at 2956.955 kb on + strand, within AZOBR_RS14070at 2956.955 kb on + strand, within AZOBR_RS14070at 2956.956 kb on - strand, within AZOBR_RS14070at 2956.956 kb on - strand, within AZOBR_RS14070at 2956.956 kb on - strand, within AZOBR_RS14070at 2957.216 kb on + strand, within AZOBR_RS14070at 2957.618 kb on + strandat 2960.706 kb on + strandat 2960.706 kb on + strandat 2960.706 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-pentyl-furan 1.335528 mM
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2,956,955 + AZOBR_RS14070 0.24 -1.4
2,956,955 + AZOBR_RS14070 0.24 -0.3
2,956,955 + AZOBR_RS14070 0.24 +0.2
2,956,956 - AZOBR_RS14070 0.24 +0.8
2,956,956 - AZOBR_RS14070 0.24 -2.2
2,956,956 - AZOBR_RS14070 0.24 -0.6
2,957,216 + AZOBR_RS14070 0.54 -0.7
2,957,618 + +1.8
2,960,706 + -0.2
2,960,706 + -0.4
2,960,706 + -1.4

Or see this region's nucleotide sequence