Experiment: 2-pentyl-furan 1.335528 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS10625 and AZOBR_RS10630 are separated by 846 nucleotides AZOBR_RS10630 and AZOBR_RS10635 are separated by 85 nucleotides AZOBR_RS10635 and AZOBR_RS10640 are separated by 92 nucleotides
AZOBR_RS10625: AZOBR_RS10625 - RNA polymerase sigma-70 factor, at 2,231,261 to 2,231,749
_RS10625
AZOBR_RS10630: AZOBR_RS10630 - lytic transglycosylase, at 2,232,596 to 2,233,591
_RS10630
AZOBR_RS10635: AZOBR_RS10635 - hypothetical protein, at 2,233,677 to 2,234,435
_RS10635
AZOBR_RS10640: AZOBR_RS10640 - tRNA-Glu, at 2,234,528 to 2,234,603
_RS10640
Position (kb)
2232
2233
2234 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2232.099 kb on + strand at 2232.103 kb on + strand at 2232.103 kb on + strand at 2232.104 kb on - strand at 2232.226 kb on + strand at 2232.398 kb on + strand at 2232.432 kb on + strand at 2232.783 kb on - strand, within AZOBR_RS10630 at 2232.851 kb on + strand, within AZOBR_RS10630 at 2232.852 kb on - strand, within AZOBR_RS10630 at 2232.876 kb on - strand, within AZOBR_RS10630 at 2232.876 kb on - strand, within AZOBR_RS10630 at 2233.145 kb on + strand, within AZOBR_RS10630 at 2233.322 kb on + strand, within AZOBR_RS10630 at 2233.322 kb on + strand, within AZOBR_RS10630 at 2233.322 kb on + strand, within AZOBR_RS10630 at 2233.323 kb on - strand, within AZOBR_RS10630 at 2233.323 kb on - strand, within AZOBR_RS10630 at 2233.323 kb on - strand, within AZOBR_RS10630 at 2233.323 kb on - strand, within AZOBR_RS10630 at 2233.323 kb on - strand, within AZOBR_RS10630 at 2233.343 kb on + strand, within AZOBR_RS10630 at 2233.344 kb on - strand, within AZOBR_RS10630 at 2233.380 kb on - strand, within AZOBR_RS10630 at 2233.409 kb on + strand, within AZOBR_RS10630 at 2233.410 kb on - strand, within AZOBR_RS10630 at 2233.446 kb on - strand, within AZOBR_RS10630 at 2233.446 kb on - strand, within AZOBR_RS10630 at 2233.446 kb on - strand, within AZOBR_RS10630 at 2233.469 kb on + strand, within AZOBR_RS10630 at 2233.714 kb on - strand at 2233.725 kb on + strand at 2233.725 kb on + strand at 2233.725 kb on + strand at 2233.725 kb on + strand at 2233.726 kb on - strand at 2233.726 kb on - strand at 2233.726 kb on - strand at 2233.726 kb on - strand at 2233.905 kb on + strand, within AZOBR_RS10635 at 2234.064 kb on + strand, within AZOBR_RS10635 at 2234.064 kb on + strand, within AZOBR_RS10635 at 2234.064 kb on + strand, within AZOBR_RS10635 at 2234.065 kb on - strand, within AZOBR_RS10635 at 2234.065 kb on - strand, within AZOBR_RS10635 at 2234.065 kb on - strand, within AZOBR_RS10635 at 2234.119 kb on - strand, within AZOBR_RS10635 at 2234.119 kb on - strand, within AZOBR_RS10635 at 2234.328 kb on + strand, within AZOBR_RS10635 at 2234.329 kb on - strand, within AZOBR_RS10635 at 2234.329 kb on - strand, within AZOBR_RS10635 at 2234.329 kb on - strand, within AZOBR_RS10635 at 2234.349 kb on + strand, within AZOBR_RS10635 at 2234.349 kb on + strand, within AZOBR_RS10635 at 2234.582 kb on + strand, within AZOBR_RS10640 at 2234.582 kb on + strand, within AZOBR_RS10640
Per-strain Table
Position Strand Gene LocusTag Fraction 2-pentyl-furan 1.335528 mM remove 2,232,099 + -0.0 2,232,103 + -0.8 2,232,103 + +1.0 2,232,104 - +0.7 2,232,226 + +2.9 2,232,398 + -1.9 2,232,432 + -0.1 2,232,783 - AZOBR_RS10630 0.19 +0.0 2,232,851 + AZOBR_RS10630 0.26 -0.2 2,232,852 - AZOBR_RS10630 0.26 +0.5 2,232,876 - AZOBR_RS10630 0.28 +0.2 2,232,876 - AZOBR_RS10630 0.28 -2.0 2,233,145 + AZOBR_RS10630 0.55 -0.0 2,233,322 + AZOBR_RS10630 0.73 +0.4 2,233,322 + AZOBR_RS10630 0.73 -0.1 2,233,322 + AZOBR_RS10630 0.73 +0.2 2,233,323 - AZOBR_RS10630 0.73 -0.6 2,233,323 - AZOBR_RS10630 0.73 -0.1 2,233,323 - AZOBR_RS10630 0.73 -0.2 2,233,323 - AZOBR_RS10630 0.73 +0.9 2,233,323 - AZOBR_RS10630 0.73 -0.9 2,233,343 + AZOBR_RS10630 0.75 -0.1 2,233,344 - AZOBR_RS10630 0.75 -0.7 2,233,380 - AZOBR_RS10630 0.79 -0.0 2,233,409 + AZOBR_RS10630 0.82 -0.4 2,233,410 - AZOBR_RS10630 0.82 +0.3 2,233,446 - AZOBR_RS10630 0.85 +0.9 2,233,446 - AZOBR_RS10630 0.85 +0.4 2,233,446 - AZOBR_RS10630 0.85 +0.6 2,233,469 + AZOBR_RS10630 0.88 -0.3 2,233,714 - -0.6 2,233,725 + -0.8 2,233,725 + -1.6 2,233,725 + -0.5 2,233,725 + -1.0 2,233,726 - -0.0 2,233,726 - +0.3 2,233,726 - +0.2 2,233,726 - -0.3 2,233,905 + AZOBR_RS10635 0.30 -0.9 2,234,064 + AZOBR_RS10635 0.51 -0.2 2,234,064 + AZOBR_RS10635 0.51 +0.0 2,234,064 + AZOBR_RS10635 0.51 +0.5 2,234,065 - AZOBR_RS10635 0.51 +0.8 2,234,065 - AZOBR_RS10635 0.51 -0.5 2,234,065 - AZOBR_RS10635 0.51 -0.3 2,234,119 - AZOBR_RS10635 0.58 -1.1 2,234,119 - AZOBR_RS10635 0.58 +0.1 2,234,328 + AZOBR_RS10635 0.86 +0.4 2,234,329 - AZOBR_RS10635 0.86 +0.1 2,234,329 - AZOBR_RS10635 0.86 +1.1 2,234,329 - AZOBR_RS10635 0.86 -1.4 2,234,349 + AZOBR_RS10635 0.89 -0.3 2,234,349 + AZOBR_RS10635 0.89 -0.6 2,234,582 + AZOBR_RS10640 0.71 +1.9 2,234,582 + AZOBR_RS10640 0.71 +0.9
Or see this region's nucleotide sequence