Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS10630

Experiment: 2-pentyl-furan 1.335528 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS10625 and AZOBR_RS10630 are separated by 846 nucleotidesAZOBR_RS10630 and AZOBR_RS10635 are separated by 85 nucleotidesAZOBR_RS10635 and AZOBR_RS10640 are separated by 92 nucleotides AZOBR_RS10625: AZOBR_RS10625 - RNA polymerase sigma-70 factor, at 2,231,261 to 2,231,749 _RS10625 AZOBR_RS10630: AZOBR_RS10630 - lytic transglycosylase, at 2,232,596 to 2,233,591 _RS10630 AZOBR_RS10635: AZOBR_RS10635 - hypothetical protein, at 2,233,677 to 2,234,435 _RS10635 AZOBR_RS10640: AZOBR_RS10640 - tRNA-Glu, at 2,234,528 to 2,234,603 _RS10640 Position (kb) 2232 2233 2234Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2232.099 kb on + strandat 2232.103 kb on + strandat 2232.103 kb on + strandat 2232.104 kb on - strandat 2232.226 kb on + strandat 2232.398 kb on + strandat 2232.432 kb on + strandat 2232.783 kb on - strand, within AZOBR_RS10630at 2232.851 kb on + strand, within AZOBR_RS10630at 2232.852 kb on - strand, within AZOBR_RS10630at 2232.876 kb on - strand, within AZOBR_RS10630at 2232.876 kb on - strand, within AZOBR_RS10630at 2233.145 kb on + strand, within AZOBR_RS10630at 2233.322 kb on + strand, within AZOBR_RS10630at 2233.322 kb on + strand, within AZOBR_RS10630at 2233.322 kb on + strand, within AZOBR_RS10630at 2233.323 kb on - strand, within AZOBR_RS10630at 2233.323 kb on - strand, within AZOBR_RS10630at 2233.323 kb on - strand, within AZOBR_RS10630at 2233.323 kb on - strand, within AZOBR_RS10630at 2233.323 kb on - strand, within AZOBR_RS10630at 2233.343 kb on + strand, within AZOBR_RS10630at 2233.344 kb on - strand, within AZOBR_RS10630at 2233.380 kb on - strand, within AZOBR_RS10630at 2233.409 kb on + strand, within AZOBR_RS10630at 2233.410 kb on - strand, within AZOBR_RS10630at 2233.446 kb on - strand, within AZOBR_RS10630at 2233.446 kb on - strand, within AZOBR_RS10630at 2233.446 kb on - strand, within AZOBR_RS10630at 2233.469 kb on + strand, within AZOBR_RS10630at 2233.714 kb on - strandat 2233.725 kb on + strandat 2233.725 kb on + strandat 2233.725 kb on + strandat 2233.725 kb on + strandat 2233.726 kb on - strandat 2233.726 kb on - strandat 2233.726 kb on - strandat 2233.726 kb on - strandat 2233.905 kb on + strand, within AZOBR_RS10635at 2234.064 kb on + strand, within AZOBR_RS10635at 2234.064 kb on + strand, within AZOBR_RS10635at 2234.064 kb on + strand, within AZOBR_RS10635at 2234.065 kb on - strand, within AZOBR_RS10635at 2234.065 kb on - strand, within AZOBR_RS10635at 2234.065 kb on - strand, within AZOBR_RS10635at 2234.119 kb on - strand, within AZOBR_RS10635at 2234.119 kb on - strand, within AZOBR_RS10635at 2234.328 kb on + strand, within AZOBR_RS10635at 2234.329 kb on - strand, within AZOBR_RS10635at 2234.329 kb on - strand, within AZOBR_RS10635at 2234.329 kb on - strand, within AZOBR_RS10635at 2234.349 kb on + strand, within AZOBR_RS10635at 2234.349 kb on + strand, within AZOBR_RS10635at 2234.582 kb on + strand, within AZOBR_RS10640at 2234.582 kb on + strand, within AZOBR_RS10640

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-pentyl-furan 1.335528 mM
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2,232,099 + -0.0
2,232,103 + -0.8
2,232,103 + +1.0
2,232,104 - +0.7
2,232,226 + +2.9
2,232,398 + -1.9
2,232,432 + -0.1
2,232,783 - AZOBR_RS10630 0.19 +0.0
2,232,851 + AZOBR_RS10630 0.26 -0.2
2,232,852 - AZOBR_RS10630 0.26 +0.5
2,232,876 - AZOBR_RS10630 0.28 +0.2
2,232,876 - AZOBR_RS10630 0.28 -2.0
2,233,145 + AZOBR_RS10630 0.55 -0.0
2,233,322 + AZOBR_RS10630 0.73 +0.4
2,233,322 + AZOBR_RS10630 0.73 -0.1
2,233,322 + AZOBR_RS10630 0.73 +0.2
2,233,323 - AZOBR_RS10630 0.73 -0.6
2,233,323 - AZOBR_RS10630 0.73 -0.1
2,233,323 - AZOBR_RS10630 0.73 -0.2
2,233,323 - AZOBR_RS10630 0.73 +0.9
2,233,323 - AZOBR_RS10630 0.73 -0.9
2,233,343 + AZOBR_RS10630 0.75 -0.1
2,233,344 - AZOBR_RS10630 0.75 -0.7
2,233,380 - AZOBR_RS10630 0.79 -0.0
2,233,409 + AZOBR_RS10630 0.82 -0.4
2,233,410 - AZOBR_RS10630 0.82 +0.3
2,233,446 - AZOBR_RS10630 0.85 +0.9
2,233,446 - AZOBR_RS10630 0.85 +0.4
2,233,446 - AZOBR_RS10630 0.85 +0.6
2,233,469 + AZOBR_RS10630 0.88 -0.3
2,233,714 - -0.6
2,233,725 + -0.8
2,233,725 + -1.6
2,233,725 + -0.5
2,233,725 + -1.0
2,233,726 - -0.0
2,233,726 - +0.3
2,233,726 - +0.2
2,233,726 - -0.3
2,233,905 + AZOBR_RS10635 0.30 -0.9
2,234,064 + AZOBR_RS10635 0.51 -0.2
2,234,064 + AZOBR_RS10635 0.51 +0.0
2,234,064 + AZOBR_RS10635 0.51 +0.5
2,234,065 - AZOBR_RS10635 0.51 +0.8
2,234,065 - AZOBR_RS10635 0.51 -0.5
2,234,065 - AZOBR_RS10635 0.51 -0.3
2,234,119 - AZOBR_RS10635 0.58 -1.1
2,234,119 - AZOBR_RS10635 0.58 +0.1
2,234,328 + AZOBR_RS10635 0.86 +0.4
2,234,329 - AZOBR_RS10635 0.86 +0.1
2,234,329 - AZOBR_RS10635 0.86 +1.1
2,234,329 - AZOBR_RS10635 0.86 -1.4
2,234,349 + AZOBR_RS10635 0.89 -0.3
2,234,349 + AZOBR_RS10635 0.89 -0.6
2,234,582 + AZOBR_RS10640 0.71 +1.9
2,234,582 + AZOBR_RS10640 0.71 +0.9

Or see this region's nucleotide sequence