Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS10625

Experiment: 2-pentyl-furan 1.335528 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS10615 and AZOBR_RS10620 are separated by 330 nucleotidesAZOBR_RS10620 and AZOBR_RS10625 are separated by 231 nucleotidesAZOBR_RS10625 and AZOBR_RS10630 are separated by 846 nucleotides AZOBR_RS10615: AZOBR_RS10615 - exported protein of unknown function, at 2,229,881 to 2,230,534 _RS10615 AZOBR_RS10620: AZOBR_RS10620 - membrane protein, at 2,230,865 to 2,231,029 _RS10620 AZOBR_RS10625: AZOBR_RS10625 - RNA polymerase sigma-70 factor, at 2,231,261 to 2,231,749 _RS10625 AZOBR_RS10630: AZOBR_RS10630 - lytic transglycosylase, at 2,232,596 to 2,233,591 _RS10630 Position (kb) 2231 2232Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2230.435 kb on - strand, within AZOBR_RS10615at 2230.462 kb on - strand, within AZOBR_RS10615at 2230.462 kb on - strand, within AZOBR_RS10615at 2230.724 kb on + strandat 2231.216 kb on - strandat 2231.221 kb on + strandat 2231.379 kb on + strand, within AZOBR_RS10625at 2231.380 kb on - strand, within AZOBR_RS10625at 2232.099 kb on + strandat 2232.103 kb on + strandat 2232.103 kb on + strandat 2232.104 kb on - strandat 2232.226 kb on + strandat 2232.398 kb on + strandat 2232.432 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-pentyl-furan 1.335528 mM
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2,230,435 - AZOBR_RS10615 0.85 +0.1
2,230,462 - AZOBR_RS10615 0.89 -0.4
2,230,462 - AZOBR_RS10615 0.89 +2.0
2,230,724 + -0.1
2,231,216 - -2.0
2,231,221 + +1.2
2,231,379 + AZOBR_RS10625 0.24 -1.7
2,231,380 - AZOBR_RS10625 0.24 -0.8
2,232,099 + -0.0
2,232,103 + -0.8
2,232,103 + +1.0
2,232,104 - +0.7
2,232,226 + +2.9
2,232,398 + -1.9
2,232,432 + -0.1

Or see this region's nucleotide sequence