Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS10315

Experiment: 2-pentyl-furan 1.335528 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS10310 and AZOBR_RS10315 are separated by 101 nucleotidesAZOBR_RS10315 and AZOBR_RS10320 are separated by 238 nucleotides AZOBR_RS10310: AZOBR_RS10310 - ribosome-associated GTPase EngA, at 2,160,027 to 2,161,430 _RS10310 AZOBR_RS10315: AZOBR_RS10315 - fumarate hydratase, at 2,161,532 to 2,163,166 _RS10315 AZOBR_RS10320: AZOBR_RS10320 - peptide synthetase, at 2,163,405 to 2,167,496 _RS10320 Position (kb) 2161 2162 2163 2164Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2161.716 kb on + strand, within AZOBR_RS10315at 2161.867 kb on - strand, within AZOBR_RS10315at 2161.899 kb on + strand, within AZOBR_RS10315at 2162.281 kb on - strand, within AZOBR_RS10315at 2162.625 kb on + strand, within AZOBR_RS10315at 2162.694 kb on + strand, within AZOBR_RS10315at 2162.695 kb on - strand, within AZOBR_RS10315at 2162.695 kb on - strand, within AZOBR_RS10315at 2163.258 kb on - strandat 2163.259 kb on + strandat 2163.259 kb on + strandat 2163.259 kb on + strandat 2163.260 kb on - strandat 2163.260 kb on - strandat 2163.260 kb on - strandat 2163.260 kb on - strandat 2163.260 kb on - strandat 2163.407 kb on - strandat 2163.562 kb on + strandat 2163.562 kb on + strandat 2163.563 kb on - strandat 2163.640 kb on + strandat 2163.641 kb on - strandat 2164.135 kb on + strand, within AZOBR_RS10320at 2164.136 kb on - strand, within AZOBR_RS10320

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-pentyl-furan 1.335528 mM
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2,161,716 + AZOBR_RS10315 0.11 -2.3
2,161,867 - AZOBR_RS10315 0.20 -0.5
2,161,899 + AZOBR_RS10315 0.22 -2.1
2,162,281 - AZOBR_RS10315 0.46 +0.3
2,162,625 + AZOBR_RS10315 0.67 -1.3
2,162,694 + AZOBR_RS10315 0.71 -0.2
2,162,695 - AZOBR_RS10315 0.71 -0.9
2,162,695 - AZOBR_RS10315 0.71 -1.6
2,163,258 - -0.9
2,163,259 + -0.4
2,163,259 + -1.5
2,163,259 + -2.9
2,163,260 - +0.9
2,163,260 - +1.4
2,163,260 - -0.6
2,163,260 - +1.1
2,163,260 - -0.7
2,163,407 - +0.1
2,163,562 + -0.4
2,163,562 + +1.9
2,163,563 - +0.1
2,163,640 + -0.7
2,163,641 - +0.2
2,164,135 + AZOBR_RS10320 0.18 -0.4
2,164,136 - AZOBR_RS10320 0.18 +0.1

Or see this region's nucleotide sequence