Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS09510

Experiment: 2-pentyl-furan 1.335528 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS09505 and AZOBR_RS09510 are separated by 34 nucleotidesAZOBR_RS09510 and AZOBR_RS09515 are separated by 123 nucleotides AZOBR_RS09505: AZOBR_RS09505 - DNA polymerase III epsilon subunit, at 1,989,476 to 1,990,789 _RS09505 AZOBR_RS09510: AZOBR_RS09510 - hypothetical protein, at 1,990,824 to 1,991,291 _RS09510 AZOBR_RS09515: AZOBR_RS09515 - heme ABC transporter ATP-binding protein, at 1,991,415 to 1,993,091 _RS09515 Position (kb) 1990 1991 1992Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1989.947 kb on + strand, within AZOBR_RS09505at 1989.947 kb on + strand, within AZOBR_RS09505at 1989.948 kb on - strand, within AZOBR_RS09505at 1989.948 kb on - strand, within AZOBR_RS09505at 1991.279 kb on - strandat 1991.279 kb on - strandat 1991.329 kb on - strandat 1991.329 kb on - strandat 1991.424 kb on + strandat 1991.430 kb on + strandat 1991.430 kb on + strandat 1991.430 kb on + strandat 1991.430 kb on + strandat 1991.431 kb on - strandat 1991.431 kb on - strandat 1991.431 kb on - strandat 1991.431 kb on - strandat 1991.431 kb on - strandat 1991.436 kb on + strandat 1991.437 kb on - strandat 1991.437 kb on - strandat 1991.437 kb on - strandat 1991.464 kb on - strandat 1991.552 kb on + strandat 1991.595 kb on + strand, within AZOBR_RS09515at 1991.595 kb on + strand, within AZOBR_RS09515at 1992.042 kb on + strand, within AZOBR_RS09515at 1992.078 kb on + strand, within AZOBR_RS09515at 1992.078 kb on + strand, within AZOBR_RS09515at 1992.150 kb on + strand, within AZOBR_RS09515at 1992.151 kb on - strand, within AZOBR_RS09515at 1992.151 kb on - strand, within AZOBR_RS09515

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-pentyl-furan 1.335528 mM
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1,989,947 + AZOBR_RS09505 0.36 -1.1
1,989,947 + AZOBR_RS09505 0.36 -1.4
1,989,948 - AZOBR_RS09505 0.36 -1.5
1,989,948 - AZOBR_RS09505 0.36 -1.9
1,991,279 - -0.9
1,991,279 - +1.9
1,991,329 - +0.3
1,991,329 - -2.6
1,991,424 + +0.7
1,991,430 + -1.3
1,991,430 + -0.8
1,991,430 + -0.5
1,991,430 + -0.3
1,991,431 - +0.0
1,991,431 - +0.3
1,991,431 - +0.4
1,991,431 - +0.2
1,991,431 - -0.6
1,991,436 + -0.2
1,991,437 - -3.2
1,991,437 - -1.6
1,991,437 - +0.9
1,991,464 - -0.8
1,991,552 + -1.2
1,991,595 + AZOBR_RS09515 0.11 -0.1
1,991,595 + AZOBR_RS09515 0.11 -0.1
1,992,042 + AZOBR_RS09515 0.37 -0.6
1,992,078 + AZOBR_RS09515 0.40 -0.7
1,992,078 + AZOBR_RS09515 0.40 -0.3
1,992,150 + AZOBR_RS09515 0.44 +0.8
1,992,151 - AZOBR_RS09515 0.44 -0.6
1,992,151 - AZOBR_RS09515 0.44 -0.6

Or see this region's nucleotide sequence