Experiment: 2-pentyl-furan 1.335528 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS08200 and AZOBR_RS08205 are separated by 133 nucleotides AZOBR_RS08205 and AZOBR_RS08210 are separated by 31 nucleotides AZOBR_RS08210 and AZOBR_RS08215 are separated by 5 nucleotides
AZOBR_RS08200: AZOBR_RS08200 - serine protease, at 1,727,612 to 1,729,147
_RS08200
AZOBR_RS08205: AZOBR_RS08205 - glycosyl transferase, at 1,729,281 to 1,730,009
_RS08205
AZOBR_RS08210: AZOBR_RS08210 - lipid A biosynthesis, at 1,730,041 to 1,730,376
_RS08210
AZOBR_RS08215: AZOBR_RS08215 - glycosyl transferase, at 1,730,382 to 1,732,058
_RS08215
Position (kb) 1730
1731 Strain fitness (log2 ratio) -1
0
1
2 at 1729.112 kb on + strand at 1729.113 kb on - strand at 1729.216 kb on - strand at 1729.258 kb on + strand at 1729.401 kb on + strand, within AZOBR_RS08205 at 1729.401 kb on + strand, within AZOBR_RS08205 at 1729.402 kb on - strand, within AZOBR_RS08205 at 1729.402 kb on - strand, within AZOBR_RS08205 at 1729.402 kb on - strand at 1729.402 kb on - strand, within AZOBR_RS08205 at 1729.402 kb on - strand, within AZOBR_RS08205 at 1729.402 kb on - strand, within AZOBR_RS08205 at 1729.863 kb on + strand, within AZOBR_RS08205 at 1729.863 kb on + strand, within AZOBR_RS08205 at 1729.863 kb on + strand, within AZOBR_RS08205 at 1729.863 kb on + strand, within AZOBR_RS08205 at 1729.863 kb on + strand at 1729.864 kb on - strand, within AZOBR_RS08205 at 1729.864 kb on - strand at 1729.960 kb on - strand at 1730.239 kb on + strand, within AZOBR_RS08210 at 1730.545 kb on - strand at 1730.598 kb on + strand, within AZOBR_RS08215 at 1730.598 kb on + strand, within AZOBR_RS08215 at 1730.599 kb on - strand, within AZOBR_RS08215 at 1731.204 kb on + strand, within AZOBR_RS08215
Per-strain Table
Position Strand Gene LocusTag Fraction 2-pentyl-furan 1.335528 mM remove 1,729,112 + +0.4 1,729,113 - +0.2 1,729,216 - +1.9 1,729,258 + +0.9 1,729,401 + AZOBR_RS08205 0.16 +1.9 1,729,401 + AZOBR_RS08205 0.16 -0.4 1,729,402 - AZOBR_RS08205 0.17 -0.7 1,729,402 - AZOBR_RS08205 0.17 +0.9 1,729,402 - +1.9 1,729,402 - AZOBR_RS08205 0.17 +1.9 1,729,402 - AZOBR_RS08205 0.17 +0.9 1,729,402 - AZOBR_RS08205 0.17 +0.9 1,729,863 + AZOBR_RS08205 0.80 +1.9 1,729,863 + AZOBR_RS08205 0.80 +0.3 1,729,863 + AZOBR_RS08205 0.80 +0.9 1,729,863 + AZOBR_RS08205 0.80 -0.7 1,729,863 + +0.9 1,729,864 - AZOBR_RS08205 0.80 +0.3 1,729,864 - +1.9 1,729,960 - +1.9 1,730,239 + AZOBR_RS08210 0.59 -0.2 1,730,545 - +0.3 1,730,598 + AZOBR_RS08215 0.13 -0.1 1,730,598 + AZOBR_RS08215 0.13 +0.9 1,730,599 - AZOBR_RS08215 0.13 -0.1 1,731,204 + AZOBR_RS08215 0.49 +0.9
Or see this region's nucleotide sequence