Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS07035

Experiment: 2-pentyl-furan 1.335528 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS07025 and AZOBR_RS07030 are separated by 78 nucleotidesAZOBR_RS07030 and AZOBR_RS07035 are separated by 119 nucleotidesAZOBR_RS07035 and AZOBR_RS07040 are separated by 129 nucleotides AZOBR_RS07025: AZOBR_RS07025 - methyltransferase, at 1,486,769 to 1,487,734 _RS07025 AZOBR_RS07030: AZOBR_RS07030 - hemerythrin, at 1,487,813 to 1,488,271 _RS07030 AZOBR_RS07035: AZOBR_RS07035 - dihydropteroate synthase, at 1,488,391 to 1,489,551 _RS07035 AZOBR_RS07040: AZOBR_RS07040 - phosphoglucosamine mutase, at 1,489,681 to 1,491,048 _RS07040 Position (kb) 1488 1489 1490Strain fitness (log2 ratio) -2 -1 0 1at 1487.615 kb on + strand, within AZOBR_RS07025at 1487.615 kb on + strand, within AZOBR_RS07025at 1487.615 kb on + strand, within AZOBR_RS07025at 1487.621 kb on + strand, within AZOBR_RS07025at 1487.622 kb on - strand, within AZOBR_RS07025at 1487.966 kb on + strand, within AZOBR_RS07030at 1488.270 kb on - strandat 1489.567 kb on - strandat 1489.567 kb on - strandat 1489.650 kb on + strandat 1489.650 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-pentyl-furan 1.335528 mM
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1,487,615 + AZOBR_RS07025 0.88 +0.3
1,487,615 + AZOBR_RS07025 0.88 +0.1
1,487,615 + AZOBR_RS07025 0.88 +0.1
1,487,621 + AZOBR_RS07025 0.88 -0.2
1,487,622 - AZOBR_RS07025 0.88 +0.4
1,487,966 + AZOBR_RS07030 0.33 -0.3
1,488,270 - -0.8
1,489,567 - -2.0
1,489,567 - +1.4
1,489,650 + -0.4
1,489,650 + -1.3

Or see this region's nucleotide sequence