Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS06230

Experiment: 2-pentyl-furan 1.335528 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS06225 and AZOBR_RS06230 are separated by 611 nucleotidesAZOBR_RS06230 and AZOBR_RS06235 are separated by 100 nucleotidesAZOBR_RS06235 and AZOBR_RS06240 are separated by 251 nucleotides AZOBR_RS06225: AZOBR_RS06225 - hypothetical protein, at 1,316,853 to 1,317,311 _RS06225 AZOBR_RS06230: AZOBR_RS06230 - hypothetical protein, at 1,317,923 to 1,319,881 _RS06230 AZOBR_RS06235: AZOBR_RS06235 - hypothetical protein, at 1,319,982 to 1,320,269 _RS06235 AZOBR_RS06240: AZOBR_RS06240 - hypothetical protein, at 1,320,521 to 1,321,024 _RS06240 Position (kb) 1317 1318 1319 1320Strain fitness (log2 ratio) -1 0 1at 1317.229 kb on - strand, within AZOBR_RS06225at 1317.637 kb on + strandat 1317.638 kb on - strandat 1317.984 kb on - strandat 1317.984 kb on - strandat 1318.707 kb on - strand, within AZOBR_RS06230at 1319.709 kb on + strandat 1319.710 kb on - strandat 1319.997 kb on - strandat 1320.412 kb on + strandat 1320.412 kb on + strandat 1320.413 kb on - strandat 1320.674 kb on + strand, within AZOBR_RS06240

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-pentyl-furan 1.335528 mM
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1,317,229 - AZOBR_RS06225 0.82 -1.3
1,317,637 + +1.5
1,317,638 - -0.8
1,317,984 - -0.3
1,317,984 - -0.2
1,318,707 - AZOBR_RS06230 0.40 -1.7
1,319,709 + +1.1
1,319,710 - -0.5
1,319,997 - +0.7
1,320,412 + +0.1
1,320,412 + +0.3
1,320,413 - -1.2
1,320,674 + AZOBR_RS06240 0.30 +0.2

Or see this region's nucleotide sequence