Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS03305

Experiment: 2-pentyl-furan 1.335528 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAZOBR_RS03295 and AZOBR_RS03300 are separated by 4 nucleotidesAZOBR_RS03300 and AZOBR_RS03305 are separated by 157 nucleotidesAZOBR_RS03305 and AZOBR_RS03310 are separated by 455 nucleotidesAZOBR_RS03310 and AZOBR_RS03315 are separated by 5 nucleotides AZOBR_RS03295: AZOBR_RS03295 - cation:proton antiporter, at 696,552 to 697,820 _RS03295 AZOBR_RS03300: AZOBR_RS03300 - GTP-binding protein YsxC, at 697,825 to 698,487 _RS03300 AZOBR_RS03305: AZOBR_RS03305 - insertase, at 698,645 to 700,384 _RS03305 AZOBR_RS03310: AZOBR_RS03310 - ribonuclease P, at 700,840 to 701,211 _RS03310 AZOBR_RS03315: AZOBR_RS03315 - 50S ribosomal protein L34, at 701,217 to 701,351 _RS03315 Position (kb) 698 699 700 701Strain fitness (log2 ratio) -1 0 1 2at 698.543 kb on - strandat 698.543 kb on - strandat 700.414 kb on - strandat 700.607 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 2-pentyl-furan 1.335528 mM
remove
698,543 - -0.9
698,543 - +0.6
700,414 - +0.3
700,607 - +1.8

Or see this region's nucleotide sequence