Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS03300

Experiment: 2-pentyl-furan 1.335528 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS03295 and AZOBR_RS03300 are separated by 4 nucleotidesAZOBR_RS03300 and AZOBR_RS03305 are separated by 157 nucleotides AZOBR_RS03295: AZOBR_RS03295 - cation:proton antiporter, at 696,552 to 697,820 _RS03295 AZOBR_RS03300: AZOBR_RS03300 - GTP-binding protein YsxC, at 697,825 to 698,487 _RS03300 AZOBR_RS03305: AZOBR_RS03305 - insertase, at 698,645 to 700,384 _RS03305 Position (kb) 697 698 699Strain fitness (log2 ratio) -2 -1 0 1at 697.012 kb on + strand, within AZOBR_RS03295at 697.013 kb on - strand, within AZOBR_RS03295at 697.013 kb on - strand, within AZOBR_RS03295at 697.013 kb on - strand, within AZOBR_RS03295at 697.165 kb on + strand, within AZOBR_RS03295at 697.283 kb on - strand, within AZOBR_RS03295at 698.543 kb on - strandat 698.543 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-pentyl-furan 1.335528 mM
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697,012 + AZOBR_RS03295 0.36 +0.3
697,013 - AZOBR_RS03295 0.36 -1.0
697,013 - AZOBR_RS03295 0.36 -1.1
697,013 - AZOBR_RS03295 0.36 -0.2
697,165 + AZOBR_RS03295 0.48 -0.2
697,283 - AZOBR_RS03295 0.58 -1.8
698,543 - -0.9
698,543 - +0.6

Or see this region's nucleotide sequence