Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS02465

Experiment: 2-pentyl-furan 1.335528 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS02460 and AZOBR_RS02465 are separated by 221 nucleotidesAZOBR_RS02465 and AZOBR_RS02470 are separated by 321 nucleotides AZOBR_RS02460: AZOBR_RS02460 - phospholipase, at 509,100 to 511,259 _RS02460 AZOBR_RS02465: AZOBR_RS02465 - endonuclease, at 511,481 to 512,191 _RS02465 AZOBR_RS02470: AZOBR_RS02470 - esterase, at 512,513 to 513,733 _RS02470 Position (kb) 511 512 513Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 510.828 kb on + strand, within AZOBR_RS02460at 510.828 kb on + strand, within AZOBR_RS02460at 510.828 kb on + strand, within AZOBR_RS02460at 510.829 kb on - strand, within AZOBR_RS02460at 510.829 kb on - strand, within AZOBR_RS02460at 510.829 kb on - strand, within AZOBR_RS02460at 511.140 kb on + strandat 511.141 kb on - strandat 511.141 kb on - strandat 512.084 kb on + strand, within AZOBR_RS02465at 512.114 kb on + strand, within AZOBR_RS02465at 512.115 kb on - strand, within AZOBR_RS02465at 512.350 kb on + strandat 512.351 kb on - strandat 512.461 kb on + strandat 512.461 kb on + strandat 512.462 kb on - strandat 512.520 kb on - strandat 512.528 kb on + strandat 512.618 kb on + strandat 512.619 kb on - strandat 512.972 kb on + strand, within AZOBR_RS02470at 512.972 kb on + strand, within AZOBR_RS02470at 512.972 kb on + strand, within AZOBR_RS02470at 512.972 kb on + strand, within AZOBR_RS02470at 512.973 kb on - strand, within AZOBR_RS02470

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-pentyl-furan 1.335528 mM
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510,828 + AZOBR_RS02460 0.80 -0.6
510,828 + AZOBR_RS02460 0.80 +0.5
510,828 + AZOBR_RS02460 0.80 -1.5
510,829 - AZOBR_RS02460 0.80 +0.2
510,829 - AZOBR_RS02460 0.80 +0.1
510,829 - AZOBR_RS02460 0.80 +1.4
511,140 + +0.8
511,141 - +0.5
511,141 - -0.9
512,084 + AZOBR_RS02465 0.85 +0.4
512,114 + AZOBR_RS02465 0.89 -1.0
512,115 - AZOBR_RS02465 0.89 -0.2
512,350 + +0.1
512,351 - -0.1
512,461 + +0.2
512,461 + -3.3
512,462 - +0.6
512,520 - +1.8
512,528 + -1.7
512,618 + +0.1
512,619 - -1.1
512,972 + AZOBR_RS02470 0.38 -0.2
512,972 + AZOBR_RS02470 0.38 -0.2
512,972 + AZOBR_RS02470 0.38 +0.2
512,972 + AZOBR_RS02470 0.38 -0.8
512,973 - AZOBR_RS02470 0.38 -1.7

Or see this region's nucleotide sequence