Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS30595

Experiment: 2-pentyl-furan 1.780666667 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS30590 and AZOBR_RS30595 are separated by 83 nucleotidesAZOBR_RS30595 and AZOBR_RS30600 are separated by 176 nucleotides AZOBR_RS30590: AZOBR_RS30590 - glutathionylspermidine synthase, at 219,778 to 220,944 _RS30590 AZOBR_RS30595: AZOBR_RS30595 - hypothetical protein, at 221,028 to 221,252 _RS30595 AZOBR_RS30600: AZOBR_RS30600 - polyhydroxyalkanoate synthesis repressor, at 221,429 to 222,067 _RS30600 Position (kb) 221 222Strain fitness (log2 ratio) -2 -1 0 1 2 3at 220.051 kb on + strand, within AZOBR_RS30590at 220.051 kb on + strand, within AZOBR_RS30590at 220.051 kb on + strand, within AZOBR_RS30590at 220.052 kb on - strand, within AZOBR_RS30590at 220.153 kb on + strand, within AZOBR_RS30590at 220.153 kb on + strand, within AZOBR_RS30590at 220.154 kb on - strand, within AZOBR_RS30590at 220.358 kb on - strand, within AZOBR_RS30590at 220.358 kb on - strand, within AZOBR_RS30590at 220.358 kb on - strand, within AZOBR_RS30590at 220.483 kb on + strand, within AZOBR_RS30590at 220.483 kb on + strand, within AZOBR_RS30590at 220.484 kb on - strand, within AZOBR_RS30590at 221.493 kb on + strand, within AZOBR_RS30600at 222.000 kb on + strand, within AZOBR_RS30600at 222.001 kb on - strandat 222.018 kb on + strandat 222.113 kb on - strandat 222.115 kb on - strandat 222.122 kb on - strandat 222.122 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-pentyl-furan 1.780666667 mM
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220,051 + AZOBR_RS30590 0.23 -1.4
220,051 + AZOBR_RS30590 0.23 +0.2
220,051 + AZOBR_RS30590 0.23 -0.7
220,052 - AZOBR_RS30590 0.23 +0.6
220,153 + AZOBR_RS30590 0.32 +0.7
220,153 + AZOBR_RS30590 0.32 -0.3
220,154 - AZOBR_RS30590 0.32 +2.8
220,358 - AZOBR_RS30590 0.50 -0.8
220,358 - AZOBR_RS30590 0.50 +0.9
220,358 - AZOBR_RS30590 0.50 +1.6
220,483 + AZOBR_RS30590 0.60 -0.2
220,483 + AZOBR_RS30590 0.60 -1.3
220,484 - AZOBR_RS30590 0.60 +0.9
221,493 + AZOBR_RS30600 0.10 +0.6
222,000 + AZOBR_RS30600 0.89 -2.2
222,001 - +0.5
222,018 + -1.0
222,113 - -0.4
222,115 - -0.0
222,122 - +0.3
222,122 - -1.5

Or see this region's nucleotide sequence